RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 MIDNQ504T8 468 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 KHDC3LQ587J8 217 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-207ENST00000507401 GGNBP1Q5YKI7 109 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 PLCXD3Q63HM9 321 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 RUSC1-AS1Q66K80 236 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 NCR3LG1Q68D85 454 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 DUX4L9Q6RFH8 374 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-207ENST00000507401 ACP7Q6ZNF0 438 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 SLC25A26Q70HW3 274 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 KCTD9Q7L273 389 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 CATSPERDQ86XM0 798 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 CALHM1Q8IU99 346 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 FGFRL1Q8N441 504 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 Q8N7P7 452 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 TMEM104Q8NE00 496 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 OR5D13Q8NGL4 314 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 OR4F5Q8NH21 305 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 CD300LFQ8TDQ1 290 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 TNFRSF14Q92956 283 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 HIST1H2BHQ93079 126 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 C10orf35Q96D05 121 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 HIST1H2BNQ99877 126 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 HIST1H2BMQ99879 126 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 PKIBQ9C010 78 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 FAM234AQ9H0X4 552 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 GAL3ST2Q9H3Q3 398 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 MBNL3Q9NUK0 354 aaKnown RBP6.55□□□□□ -1.36
SCN1A-207ENST00000507401 ONECUT1Q9UBC0 465 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 HHLA2Q9UM44 414 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 GPR132Q9UNW8 380 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 SLC7A11Q9UPY5 501 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 SLC22A13Q9Y226 551 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 POLDIP2Q9Y2S7 368 aa6.55□□□□□ -1.36
SCN1A-207ENST00000507401 MGAM2Q2M2H8 2515 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 TRAV8-7A0A075B6U6 113 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 A0A0U1RQK1 487 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 FAM230AA0A1W2PPH8 454 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 CLPSL1A2RUU4 121 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 M0QYG6 137 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 ITGB1BP1O14713 200 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 NPFFO15130 113 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 GPR137BO60478 399 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 DEDDO75618 318 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 LY86O95711 162 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 MAS1P04201 325 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 OR8U9P0C7N5 309 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 FUT6P51993 359 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 ERVFC1-1P60608 527 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 UBE2KP61086 200 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 ERVK11-1P61568 191 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 IL24Q13007 206 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 PMS2P11Q13670 270 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 IL13RA2Q14627 380 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 ELOBQ15370 118 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 TMEM241Q24JQ0 296 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 ACOT6Q3I5F7 207 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-207ENST00000507401 RPL7L1Q6DKI1 246 aaKnown RBP6.54□□□□□ -1.36
SCN1A-207ENST00000507401 TRAPPC6BQ86SZ2 158 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 SGPP2Q8IWX5 399 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 PRSS35Q8N3Z0 413 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 ZNRF1Q8ND25 227 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 OR13C3Q8NGS6 347 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 OR8U1Q8NH10 309 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 H1FXQ92522 213 aaKnown RBP6.54□□□□□ -1.36
SCN1A-207ENST00000507401 TMEM18Q96B42 140 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 GNPNAT1Q96EK6 184 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-207ENST00000507401 RSRP1Q9BUV0 290 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 SCRT1Q9BWW7 348 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 TTTY10Q9BZA0 68 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 HES4Q9HCC6 221 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 OR2S2Q9NQN1 319 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.54□□□□□ -1.36
SCN1A-207ENST00000507401 C1RLQ9NZP8 487 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 RNF150Q9ULK6 438 aa6.54□□□□□ -1.36
SCN1A-207ENST00000507401 TRAV1-1A0A0B4J248 108 aa6.53□□□□□ -1.36
SCN1A-207ENST00000507401 A0A1W2PPE2 198 aa6.53□□□□□ -1.36
SCN1A-207ENST00000507401 IFITM10A6NMD0 228 aa6.53□□□□□ -1.36
SCN1A-207ENST00000507401 H0YIZ8 118 aa6.53□□□□□ -1.36
SCN1A-207ENST00000507401 CCSO14618 274 aa6.53□□□□□ -1.36
SCN1A-207ENST00000507401 DLEU1O43261 78 aa6.53□□□□□ -1.36
SCN1A-207ENST00000507401 SYNGR1O43759 233 aa6.53□□□□□ -1.36
SCN1A-207ENST00000507401 RPP14O95059 124 aaKnown RBP6.53□□□□□ -1.36
SCN1A-207ENST00000507401 KNG1P01042 644 aa6.53□□□□□ -1.36
SCN1A-207ENST00000507401 IGHV4-59P01825 116 aa6.53□□□□□ -1.36
SCN1A-207ENST00000507401 PTHLHP12272 177 aa6.53□□□□□ -1.36
SCN1A-207ENST00000507401 AKR1C4P17516 323 aa6.53□□□□□ -1.36
SCN1A-207ENST00000507401 MDKP21741 143 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-207ENST00000507401 FCGR2CP31995 323 aa6.53□□□□□ -1.36
SCN1A-207ENST00000507401 KIR3DL2P43630 455 aa6.53□□□□□ -1.36
SCN1A-207ENST00000507401 SOX2P48431 317 aa6.53□□□□□ -1.36
SCN1A-207ENST00000507401 EFNB2P52799 333 aa6.53□□□□□ -1.36
SCN1A-207ENST00000507401 SRPXP78539 464 aa6.53□□□□□ -1.36
SCN1A-207ENST00000507401 TAF9Q16594 264 aa6.53□□□□□ -1.36
SCN1A-207ENST00000507401 ZNF506Q5JVG8 444 aa6.53□□□□□ -1.36
SCN1A-207ENST00000507401 CD177Q8N6Q3 437 aa6.53□□□□□ -1.36
SCN1A-207ENST00000507401 CASTOR1Q8WTX7 329 aa6.53□□□□□ -1.36
SCN1A-207ENST00000507401 PP6455Q8WZ26 134 aa6.53□□□□□ -1.36
SCN1A-207ENST00000507401 FAM210BQ96KR6 192 aa6.53□□□□□ -1.36
SCN1A-207ENST00000507401 IMMP2LQ96T52 175 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms