RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 TMED6Q8WW62 240 aa6.88□□□□□ -1.31
USP54-215ENST00000497106 METTL15P1P0C7V9 234 aa6.87□□□□□ -1.31
USP54-215ENST00000497106 CLEC12BQ2HXU8 276 aa6.87□□□□□ -1.31
USP54-215ENST00000497106 FAM213BQ8TBF2 198 aa6.87□□□□□ -1.31
USP54-215ENST00000497106 QTRT1Q9BXR0 403 aaKnown RBP6.87□□□□□ -1.31
USP54-215ENST00000497106 LIME1Q9H400 295 aa6.87□□□□□ -1.31
USP54-215ENST00000497106 SLC39A9Q9NUM3 307 aa6.87□□□□□ -1.31
USP54-215ENST00000497106 METTL1Q9UBP6 276 aaKnown RBP6.87□□□□□ -1.31
USP54-215ENST00000497106 HSPB7Q9UBY9 170 aa6.87□□□□□ -1.31
USP54-215ENST00000497106 CDH23Q9H251 3354 aa6.87□□□□□ -1.31
USP54-215ENST00000497106 IGHV2-70DA0A0C4DH43 119 aa6.87□□□□□ -1.31
USP54-215ENST00000497106 H3BP45 60 aa6.87□□□□□ -1.31
USP54-215ENST00000497106 MOSP00540 346 aa6.87□□□□□ -1.31
USP54-215ENST00000497106 IGHV2-5P01817 119 aa6.87□□□□□ -1.31
USP54-215ENST00000497106 TAS2R45P59539 299 aa6.87□□□□□ -1.31
USP54-215ENST00000497106 DLK1P80370 383 aa6.87□□□□□ -1.31
USP54-215ENST00000497106 TMEM177Q53S58 311 aa6.87□□□□□ -1.31
USP54-215ENST00000497106 TPTE2P1Q5T6R2 138 aa6.87□□□□□ -1.31
USP54-215ENST00000497106 ZNF787Q6DD87 383 aa6.87□□□□□ -1.31
USP54-215ENST00000497106 ZNF429Q86V71 674 aa6.87□□□□□ -1.31
USP54-215ENST00000497106 THNSL2Q86YJ6 484 aa6.87□□□□□ -1.31
USP54-215ENST00000497106 FOXA2Q9Y261 457 aaPredicted RBP6.87□□□□□ -1.31
USP54-215ENST00000497106 PRB1P04280 392 aa6.87□□□□□ -1.31
USP54-215ENST00000497106 TMEM11P17152 192 aa6.87□□□□□ -1.31
USP54-215ENST00000497106 UQCC3Q6UW78 93 aa6.87□□□□□ -1.31
USP54-215ENST00000497106 BPESC1Q9GZL8 116 aa6.87□□□□□ -1.31
USP54-215ENST00000497106 CTSZQ9UBR2 303 aa6.87□□□□□ -1.31
USP54-215ENST00000497106 KRBOX1C9JBD0 128 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 BUB1B-PAK6H3BSN5 160 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 H2AFB1P0C5Y9 115 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 CD1BP29016 333 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 SERF2P84101 59 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 RPL7L1Q6DKI1 246 aaKnown RBP6.86□□□□□ -1.31
USP54-215ENST00000497106 TMEM182Q6ZP80 229 aaPredicted RBP6.86□□□□□ -1.31
USP54-215ENST00000497106 EIF5A2Q9GZV4 153 aaKnown RBP6.86□□□□□ -1.31
USP54-215ENST00000497106 GSN-AS1Q9NRJ2 163 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 GAR1Q9NY12 217 aaKnown RBP6.86□□□□□ -1.31
USP54-215ENST00000497106 A0A087X0M5 115 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 UBE2L5PA0A1B0GUS4 154 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 A0A1B0GX30 115 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 J3QLI3 93 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 ZNF525Q8N782 197 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 CLDND2Q8NHS1 167 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 TIMM9Q9Y5J7 89 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 POLEQ07864 2286 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 H0YJW9 148 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 RAB4AP20338 218 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 RNF126Q9BV68 326 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 RTTNQ86VV8 2226 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 RNF222A6NCQ9 220 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 S100A8P05109 93 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 POU2AF1Q16633 256 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 VMO1Q7Z5L0 202 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 LRRC75A-AS1Q8N1F1 130 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 MALSU1Q96EH3 234 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 NABP2Q9BQ15 211 aa6.86□□□□□ -1.31
USP54-215ENST00000497106 SRSF8Q9BRL6 282 aaKnown RBP6.86□□□□□ -1.31
USP54-215ENST00000497106 RPL30P62888 115 aaKnown RBP6.85□□□□□ -1.31
USP54-215ENST00000497106 TMEM167AQ8TBQ9 72 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 GPHA2Q96T91 129 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 M0QZK8 103 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 SLC31A2O15432 143 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 CT45A6P0DMU7 189 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 CT45A5P0DMU8 189 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 CT45A7P0DMV0 189 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 IGFBP2P18065 325 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 UBE2E1P51965 193 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 LINC01356Q8N9X3 169 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 PSMG3Q9BT73 122 aaPredicted RBP6.85□□□□□ -1.31
USP54-215ENST00000497106 OR51M1Q9H341 326 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 HILPDAQ9Y5L2 63 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 TPRP12270 2363 aaKnown RBP6.85□□□□□ -1.31
USP54-215ENST00000497106 A8MXK9 166 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 SIAH2O43255 324 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 SLC25A17O43808 307 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 FBP1P09467 338 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 SAA1P0DJI8 122 aaPredicted RBP6.85□□□□□ -1.31
USP54-215ENST00000497106 CGB3P0DN86 165 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 CGB7P0DN87 165 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 LAMTOR1Q6IAA8 161 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 ZNF439Q8NDP4 499 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 OR1L4Q8NGR5 311 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 TCEAL7Q9BRU2 100 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 PARP12Q9H0J9 701 aaKnown RBP6.85□□□□□ -1.31
USP54-215ENST00000497106 HRH4Q9H3N8 390 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 MMP26Q9NRE1 261 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 IGHV1-3A0A0C4DH29 117 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 C19orf84I3L1E1 186 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 RAMP3O60896 148 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 IGKV1-5P01602 117 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 OPRK1P41145 380 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 PRCDQ00LT1 54 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 ZNF585BQ52M93 769 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 DUX4L9Q6RFH8 374 aaPredicted RBP6.85□□□□□ -1.31
USP54-215ENST00000497106 ZNF383Q8NA42 475 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 NPVFQ9HCQ7 196 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 PARP11Q9NR21 331 aa6.85□□□□□ -1.31
USP54-215ENST00000497106 CACNA1BQ00975 2339 aa6.84□□□□□ -1.31
USP54-215ENST00000497106 NBR2O15453 112 aa6.84□□□□□ -1.31
USP54-215ENST00000497106 OR5AN1Q8NGI8 311 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms