RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 IFITM1P13164 125 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 VDAC2P45880 294 aaPredicted RBP5.03□□□□□ -1.6
USF3-204ENST00000496826 C3AR1Q16581 482 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 DEFB133Q30KQ1 61 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 LDLRAD2Q5SZI1 272 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 FAM219BQ5XKK7 198 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 VN1R2Q8NFZ6 395 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 RNF125Q96EQ8 232 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 SS18L2Q9UHA2 77 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 CCDC88AQ3V6T2 1871 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 IGKV3-7A0A075B6H7 116 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 NPIPB13A6NJU9 1138 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 NPIPB5A8MRT5 1133 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 D6R8Y8 96 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 HERVK_113P63121 156 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 HERV-K104P63124 156 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 PDCD1Q15116 288 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 ADAMTSL4Q6UY14 1074 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 PRSS45Q7RTY3 260 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 TMEM25Q86YD3 366 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 GLIS2Q9BZE0 524 aaPredicted RBP5.03□□□□□ -1.6
USF3-204ENST00000496826 DOCK6Q96HP0 2047 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 A0A1W2PR80 420 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 TMEM256Q8N2U0 113 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 F11RQ9Y624 299 aaKnown RBP5.03□□□□□ -1.6
USF3-204ENST00000496826 SDK2Q58EX2 2172 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 PHF3Q92576 2039 aaKnown RBP5.03□□□□□ -1.6
USF3-204ENST00000496826 GRIFINA4D1Z8 144 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 RHODO00212 210 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 PSPNO60542 156 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 PPICP45877 212 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.03□□□□□ -1.6
USF3-204ENST00000496826 NEU4Q8WWR8 484 aaPredicted RBP5.03□□□□□ -1.6
USF3-204ENST00000496826 SF3B5Q9BWJ5 86 aaKnown RBP5.03□□□□□ -1.6
USF3-204ENST00000496826 FRRS1LQ9P0K9 344 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 RNF17Q9BXT8 1623 aaKnown RBP5.03□□□□□ -1.6
USF3-204ENST00000496826 PRAG1Q86YV5 1406 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 CD163L1Q9NR16 1453 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 PPIAL4EA0A075B759 164 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 A0A0U1RQF3 1178 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 PPIAL4DF5H284 164 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 PPIAL4FP0DN26 164 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 ZNF83P51522 516 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 FOXG1P55316 489 aaPredicted RBP5.03□□□□□ -1.6
USF3-204ENST00000496826 SPSB2Q99619 263 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 RBM38Q9H0Z9 239 aaKnown RBP5.03□□□□□ -1.6
USF3-204ENST00000496826 MRPS18AQ9NVS2 196 aaKnown RBP5.03□□□□□ -1.6
USF3-204ENST00000496826 DLL3Q9NYJ7 618 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 ERRFI1Q9UJM3 462 aaPredicted RBP5.03□□□□□ -1.6
USF3-204ENST00000496826 PPIAL4AQ9Y536 164 aa5.03□□□□□ -1.6
USF3-204ENST00000496826 RPL31P62899 125 aaKnown RBP5.02□□□□□ -1.61
USF3-204ENST00000496826 FAM53BQ14153 422 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 BVES-AS1Q5T3Y7 98 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 SP5Q6BEB4 398 aaPredicted RBP5.02□□□□□ -1.61
USF3-204ENST00000496826 KIR3DX1Q9H7L2 352 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 LHX9Q9NQ69 397 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 MYOFQ9NZM1 2061 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 FAM240AA0A1B0GVK7 77 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 J3KT08 172 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 ACTL10Q5JWF8 245 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 TMEM144Q7Z5S9 345 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 EMID1Q96A84 441 aaPredicted RBP5.02□□□□□ -1.61
USF3-204ENST00000496826 TRAV5A0A0B4J249 113 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 RAE1P78406 368 aaKnown RBP5.02□□□□□ -1.61
USF3-204ENST00000496826 VGLL4Q14135 290 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 ITSN1Q15811 1721 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 WDR38Q5JTN6 314 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 FAM166AQ6J272 317 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 DEFB127Q9H1M4 99 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 KIAA1210Q9ULL0 1709 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 H0YGG7 62 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 ZNF205O95201 554 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 DIAPH2-AS1Q14236 149 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 NEUROG3Q9Y4Z2 214 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 EFCAB6Q5THR3 1501 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 ATOX1O00244 68 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 ATP5J2P56134 94 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 COL9A2Q14055 689 aaPredicted RBP5.02□□□□□ -1.61
USF3-204ENST00000496826 DUSP15Q9H1R2 295 aaPredicted RBP5.02□□□□□ -1.61
USF3-204ENST00000496826 NWD1Q149M9 1564 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 USP17L23D6RBM5 183 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 C8orf88P0DMB2 117 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 APOBEC3AP31941 199 aaPredicted RBP5.02□□□□□ -1.61
USF3-204ENST00000496826 FOXL1Q12952 345 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 TEX38Q6PEX7 206 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 CBLL1Q75N03 491 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 AMN1Q8IY45 258 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 C1QTNF5Q9BXJ0 243 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 WNT10AQ9GZT5 417 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 MST1RQ04912 1400 aa5.02□□□□□ -1.61
USF3-204ENST00000496826 CD33P20138 364 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 YPEL3P61236 119 aaPredicted RBP5.01□□□□□ -1.61
USF3-204ENST00000496826 PI3P19957 117 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 DCAF12L2Q5VW00 463 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 VGLL2Q8N8G2 317 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 NT5CQ8TCD5 201 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 FOXB1Q99853 325 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 PRO1933Q9H354 126 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 LTBP3Q9NS15 1303 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 ZNF840PA6NDX5 716 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms