RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 EDDM3AQ14507 147 aa2.82□□□□□ -1.96
VPS13A-212ENST00000493341 TMEM69Q5SWH9 247 aa2.82□□□□□ -1.96
VPS13A-212ENST00000493341 LDLRAD2Q5SZI1 272 aa2.82□□□□□ -1.96
VPS13A-212ENST00000493341 C16orf47Q6ZP98 133 aaPredicted RBP2.82□□□□□ -1.96
VPS13A-212ENST00000493341 C1orf174Q8IYL3 243 aa2.82□□□□□ -1.96
VPS13A-212ENST00000493341 UBE2WQ96B02 151 aa2.82□□□□□ -1.96
VPS13A-212ENST00000493341 DCUN1D1Q96GG9 259 aa2.82□□□□□ -1.96
VPS13A-212ENST00000493341 LINC00477Q96M19 166 aa2.82□□□□□ -1.96
VPS13A-212ENST00000493341 ANAPC10Q9UM13 185 aa2.82□□□□□ -1.96
VPS13A-212ENST00000493341 TOGARAM1Q9Y4F4 1720 aa2.82□□□□□ -1.96
VPS13A-212ENST00000493341 GSTZ1O43708 216 aaPredicted RBP2.81□□□□□ -1.96
VPS13A-212ENST00000493341 FSTL3O95633 263 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 ZNF32P17041 273 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 CCL1P22362 96 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 FAM201AQ5SY85 155 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 LRP11Q86VZ4 500 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 DEFB125Q8N687 156 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 HIST1H2BAQ96A08 127 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 MS4A6EQ96DS6 147 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 PHB2Q99623 299 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 SPIN2AQ99865 258 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 SPIN2BQ9BPZ2 258 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 FAM96AQ9H5X1 160 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 CXorf21Q9HAI6 301 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 SLC23A2Q9UGH3 650 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 ADAMTS7Q9UKP4 1686 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 ZBED9Q6R2W3 1325 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 SCN11AQ9UI33 1791 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 C5P01031 1676 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 A0A087WUJ7 227 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 COLCA2A8K830 154 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 ACOT6Q3I5F7 207 aaPredicted RBP2.81□□□□□ -1.96
VPS13A-212ENST00000493341 ZNF709Q8N972 641 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 ZNF721Q8TF20 911 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 AP3S1Q92572 193 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 RMI2Q96E14 147 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 TBX5Q99593 518 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 VCX3BQ9H321 246 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 ZNF835Q9Y2P0 537 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 MMACHCQ9Y4U1 282 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 U3KQK5 164 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 NSD3Q9BZ95 1437 aa2.81□□□□□ -1.96
VPS13A-212ENST00000493341 UBR3Q6ZT12 1888 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 IGLV4-60A0A075B6I1 120 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 CYSRT1A8MQ03 144 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 PSMD12O00232 456 aaPredicted RBP2.8□□□□□ -1.96
VPS13A-212ENST00000493341 ZNF189O75820 626 aaPredicted RBP2.8□□□□□ -1.96
VPS13A-212ENST00000493341 IGHG2P01859 326 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 OR5G3P0C626 314 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 KLF3P57682 345 aaPredicted RBP2.8□□□□□ -1.96
VPS13A-212ENST00000493341 EBI3Q14213 229 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 CDK10Q15131 360 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 TMEM97Q5BJF2 176 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 PPP1R2P1Q96PQ5 205 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 DCSTAMPQ9H295 470 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 CMTM6Q9NX76 183 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 PRELID1Q9Y255 219 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 LINC00588Q9Y4M8 146 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 ARL5AQ9Y689 179 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 COL5A3P25940 1745 aaPredicted RBP2.8□□□□□ -1.96
VPS13A-212ENST00000493341 SIPA1L3O60292 1781 aaPredicted RBP2.8□□□□□ -1.96
VPS13A-212ENST00000493341 IGHV3OR16-8A0A075B7F1 116 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 TRAV40A0A0B4J280 105 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 TMEM150BA6NC51 233 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 E5RI56 91 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 INMT-MINDY4F8WBC2 141 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 H3BQ85 93 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 MT-CO2P00403 227 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 PFN1P07737 140 aaKnown RBP2.8□□□□□ -1.96
VPS13A-212ENST00000493341 FGF6P10767 208 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 MAGEA12P43365 314 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 C5orf46Q6UWT4 87 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 ALKAL1Q6UXT8 129 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 DEFB132Q7Z7B7 95 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 C1orf158Q8N1D5 194 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 LY6G5BQ8NDX9 201 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 PXT1Q8NFP0 134 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 LHFPL5Q8TAF8 219 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 C12orf43Q96C57 262 aaKnown RBP2.8□□□□□ -1.96
VPS13A-212ENST00000493341 CMSS1Q9BQ75 279 aaKnown RBP2.8□□□□□ -1.96
VPS13A-212ENST00000493341 ULBP3Q9BZM4 244 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 DOK5Q9P104 306 aa2.8□□□□□ -1.96
VPS13A-212ENST00000493341 THADAQ6YHU6 1953 aa2.79□□□□□ -1.96
VPS13A-212ENST00000493341 UBR2Q8IWV8 1755 aa2.79□□□□□ -1.96
VPS13A-212ENST00000493341 TRBV24-1A0A075B6N3 115 aa2.79□□□□□ -1.96
VPS13A-212ENST00000493341 GOLGA6L4A6NEF3 574 aa2.79□□□□□ -1.96
VPS13A-212ENST00000493341 RPL36A-HNRNPH2H7BZ11 118 aa2.79□□□□□ -1.96
VPS13A-212ENST00000493341 SH2D1AO60880 128 aa2.79□□□□□ -1.96
VPS13A-212ENST00000493341 FABP9Q0Z7S8 132 aa2.79□□□□□ -1.96
VPS13A-212ENST00000493341 SLC9A3R2Q15599 337 aa2.79□□□□□ -1.96
VPS13A-212ENST00000493341 OR8G1Q15617 311 aa2.79□□□□□ -1.96
VPS13A-212ENST00000493341 LIN52Q52LA3 116 aa2.79□□□□□ -1.96
VPS13A-212ENST00000493341 UMODL1-AS1Q8N2C9 162 aa2.79□□□□□ -1.96
VPS13A-212ENST00000493341 OR10X1Q8NGY0 326 aa2.79□□□□□ -1.96
VPS13A-212ENST00000493341 BTF3L4Q96K17 158 aa2.79□□□□□ -1.96
VPS13A-212ENST00000493341 OR52E6Q96RD3 313 aa2.79□□□□□ -1.96
VPS13A-212ENST00000493341 SIGMAR1Q99720 223 aa2.79□□□□□ -1.96
VPS13A-212ENST00000493341 TRIM4Q9C037 500 aa2.79□□□□□ -1.96
VPS13A-212ENST00000493341 OR5V1Q9UGF6 321 aa2.79□□□□□ -1.96
VPS13A-212ENST00000493341 COQ4Q9Y3A0 265 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms