RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 COA4Q9NYJ1 87 aa13.96□□□□□ -0.17
COL9A3-214ENST00000490398 ANKRD34BA5PLL1 514 aa13.95□□□□□ -0.18
COL9A3-214ENST00000490398 CGB1A6NKQ9 187 aa13.95□□□□□ -0.18
COL9A3-214ENST00000490398 H3BUA1 57 aa13.95□□□□□ -0.18
COL9A3-214ENST00000490398 M0QYG6 137 aa13.95□□□□□ -0.18
COL9A3-214ENST00000490398 TRBV12-3P01733 135 aa13.95□□□□□ -0.18
COL9A3-214ENST00000490398 C9orf66Q5T8R8 295 aa13.95□□□□□ -0.18
COL9A3-214ENST00000490398 OR4A47Q6IF82 309 aa13.95□□□□□ -0.18
COL9A3-214ENST00000490398 LAX1Q8IWV1 398 aa13.95□□□□□ -0.18
COL9A3-214ENST00000490398 OR52I2Q8NH67 350 aa13.95□□□□□ -0.18
COL9A3-214ENST00000490398 AP3S1Q92572 193 aa13.95□□□□□ -0.18
COL9A3-214ENST00000490398 GPR61Q9BZJ8 451 aa13.95□□□□□ -0.18
COL9A3-214ENST00000490398 KLK11Q9UBX7 282 aa13.95□□□□□ -0.18
COL9A3-214ENST00000490398 ADAM30Q9UKF2 790 aa13.95□□□□□ -0.18
COL9A3-214ENST00000490398 OVOL1O14753 267 aa13.94□□□□□ -0.18
COL9A3-214ENST00000490398 PGLYRP1O75594 196 aaPredicted RBP13.94□□□□□ -0.18
COL9A3-214ENST00000490398 S1PR2O95136 353 aa13.94□□□□□ -0.18
COL9A3-214ENST00000490398 BRI3O95415 125 aa13.94□□□□□ -0.18
COL9A3-214ENST00000490398 HSPB1P04792 205 aaKnown RBP13.94□□□□□ -0.18
COL9A3-214ENST00000490398 RLN1P04808 185 aa13.94□□□□□ -0.18
COL9A3-214ENST00000490398 OR9G9P0C7N8 305 aa13.94□□□□□ -0.18
COL9A3-214ENST00000490398 CD40LGP29965 261 aa13.94□□□□□ -0.18
COL9A3-214ENST00000490398 KIR2DS2P43631 304 aa13.94□□□□□ -0.18
COL9A3-214ENST00000490398 AADACL3Q5VUY0 350 aa13.94□□□□□ -0.18
COL9A3-214ENST00000490398 OR6F1Q8NGZ6 308 aa13.94□□□□□ -0.18
COL9A3-214ENST00000490398 DYNC2LI1Q8TCX1 351 aa13.94□□□□□ -0.18
COL9A3-214ENST00000490398 TMEM68Q96MH6 324 aa13.94□□□□□ -0.18
COL9A3-214ENST00000490398 COL7A1Q02388 2944 aa13.94□□□□□ -0.18
COL9A3-214ENST00000490398 MPPED1O15442 326 aa13.93□□□□□ -0.18
COL9A3-214ENST00000490398 RBFOX2O43251 390 aaKnown RBP eCLIP13.93□□□□□ -0.18
COL9A3-214ENST00000490398 RCVRNP35243 200 aa13.93□□□□□ -0.18
COL9A3-214ENST00000490398 DGCR2P98153 550 aa13.93□□□□□ -0.18
COL9A3-214ENST00000490398 FYTTD1Q96QD9 318 aaKnown RBP13.93□□□□□ -0.18
COL9A3-214ENST00000490398 PRR25Q96S07 402 aa13.93□□□□□ -0.18
COL9A3-214ENST00000490398 C13orf42A0A1B0GVH6 325 aa13.92□□□□□ -0.18
COL9A3-214ENST00000490398 ACTL6BO94805 426 aa13.92□□□□□ -0.18
COL9A3-214ENST00000490398 HRASP01112 189 aa13.92□□□□□ -0.18
COL9A3-214ENST00000490398 AREGP15514 252 aa13.92□□□□□ -0.18
COL9A3-214ENST00000490398 RPL27AP46776 148 aaKnown RBP13.92□□□□□ -0.18
COL9A3-214ENST00000490398 CATR1Q13166 79 aa13.92□□□□□ -0.18
COL9A3-214ENST00000490398 ZNF585BQ52M93 769 aa13.92□□□□□ -0.18
COL9A3-214ENST00000490398 PHLDA2Q53GA4 152 aa13.92□□□□□ -0.18
COL9A3-214ENST00000490398 DEFB121Q5J5C9 76 aa13.92□□□□□ -0.18
COL9A3-214ENST00000490398 TTC9CQ8N5M4 171 aa13.92□□□□□ -0.18
COL9A3-214ENST00000490398 SPIN2AQ99865 258 aa13.92□□□□□ -0.18
COL9A3-214ENST00000490398 SPIN2BQ9BPZ2 258 aa13.92□□□□□ -0.18
COL9A3-214ENST00000490398 AKIP1Q9NQ31 210 aa13.92□□□□□ -0.18
COL9A3-214ENST00000490398 BET1LQ9NYM9 111 aa13.92□□□□□ -0.18
COL9A3-214ENST00000490398 HPRT1P00492 218 aa13.91□□□□□ -0.18
COL9A3-214ENST00000490398 ZNF735P0CB33 412 aa13.91□□□□□ -0.18
COL9A3-214ENST00000490398 ECI1P42126 302 aa13.91□□□□□ -0.18
COL9A3-214ENST00000490398 RPL5P46777 297 aaKnown RBP13.91□□□□□ -0.18
COL9A3-214ENST00000490398 TMBIM6P55061 237 aa13.91□□□□□ -0.18
COL9A3-214ENST00000490398 TAS2R31P59538 309 aa13.91□□□□□ -0.18
COL9A3-214ENST00000490398 TSPAN5P62079 268 aa13.91□□□□□ -0.18
COL9A3-214ENST00000490398 POU2AF1Q16633 256 aa13.91□□□□□ -0.18
COL9A3-214ENST00000490398 ZNF343Q6P1L6 599 aa13.91□□□□□ -0.18
COL9A3-214ENST00000490398 HAPLN4Q86UW8 402 aa13.91□□□□□ -0.18
COL9A3-214ENST00000490398 VSTM2AQ8TAG5 236 aa13.91□□□□□ -0.18
COL9A3-214ENST00000490398 RAB2BQ8WUD1 216 aa13.91□□□□□ -0.18
COL9A3-214ENST00000490398 TRBV9A0A0B4J1U6 114 aa13.9□□□□□ -0.18
COL9A3-214ENST00000490398 H3BMQ9 156 aa13.9□□□□□ -0.18
COL9A3-214ENST00000490398 GPR31O00270 319 aa13.9□□□□□ -0.18
COL9A3-214ENST00000490398 UPK2O00526 184 aa13.9□□□□□ -0.18
COL9A3-214ENST00000490398 RGS5O15539 181 aa13.9□□□□□ -0.18
COL9A3-214ENST00000490398 CREBL2O60519 120 aaPredicted RBP13.9□□□□□ -0.18
COL9A3-214ENST00000490398 OR2J3O76001 311 aa13.9□□□□□ -0.18
COL9A3-214ENST00000490398 CD3DP04234 171 aa13.9□□□□□ -0.18
COL9A3-214ENST00000490398 REG1AP05451 166 aa13.9□□□□□ -0.18
COL9A3-214ENST00000490398 NQO2P16083 231 aa13.9□□□□□ -0.18
COL9A3-214ENST00000490398 HLA-GP17693 338 aa13.9□□□□□ -0.18
COL9A3-214ENST00000490398 F2RP25116 425 aa13.9□□□□□ -0.18
COL9A3-214ENST00000490398 LPAR6P43657 344 aa13.9□□□□□ -0.18
COL9A3-214ENST00000490398 RPL8P62917 257 aaKnown RBP13.9□□□□□ -0.18
COL9A3-214ENST00000490398 RHOGP84095 191 aa13.9□□□□□ -0.18
COL9A3-214ENST00000490398 VAX1Q5SQQ9 334 aa13.9□□□□□ -0.18
COL9A3-214ENST00000490398 OR4D10Q8NGI6 311 aa13.9□□□□□ -0.18
COL9A3-214ENST00000490398 FCAMRQ8WWV6 532 aa13.9□□□□□ -0.18
COL9A3-214ENST00000490398 RSRP1Q9BUV0 290 aa13.9□□□□□ -0.18
COL9A3-214ENST00000490398 HRASLSQ9HDD0 168 aa13.9□□□□□ -0.18
COL9A3-214ENST00000490398 TMEM140Q9NV12 185 aa13.9□□□□□ -0.18
COL9A3-214ENST00000490398 MTFP1Q9UDX5 166 aa13.9□□□□□ -0.18
COL9A3-214ENST00000490398 DNAH7Q8WXX0 4024 aa13.89□□□□□ -0.19
COL9A3-214ENST00000490398 A0A0G2JLM5 398 aa13.89□□□□□ -0.19
COL9A3-214ENST00000490398 SAP30O75446 220 aa13.89□□□□□ -0.19
COL9A3-214ENST00000490398 OR2B8PP59922 312 aa13.89□□□□□ -0.19
COL9A3-214ENST00000490398 ACSM6Q6P461 480 aa13.89□□□□□ -0.19
COL9A3-214ENST00000490398 ISOC1Q96CN7 298 aa13.89□□□□□ -0.19
COL9A3-214ENST00000490398 DGCR14Q96DF8 476 aaKnown RBP13.89□□□□□ -0.19
COL9A3-214ENST00000490398 FANCD2OSQ96PS1 177 aa13.89□□□□□ -0.19
COL9A3-214ENST00000490398 PLEKHA2Q9HB19 425 aa13.89□□□□□ -0.19
COL9A3-214ENST00000490398 RANGRFQ9HD47 186 aaPredicted RBP13.89□□□□□ -0.19
COL9A3-214ENST00000490398 SLC2A9Q9NRM0 540 aa13.89□□□□□ -0.19
COL9A3-214ENST00000490398 CCDC59Q9P031 241 aaKnown RBP13.89□□□□□ -0.19
COL9A3-214ENST00000490398 CEPT1Q9Y6K0 416 aa13.89□□□□□ -0.19
COL9A3-214ENST00000490398 NDUFB8O95169 186 aa13.88□□□□□ -0.19
COL9A3-214ENST00000490398 PI3P19957 117 aa13.88□□□□□ -0.19
COL9A3-214ENST00000490398 MAS1LP35410 378 aa13.88□□□□□ -0.19
COL9A3-214ENST00000490398 TBC1D26Q86UD7 250 aa13.88□□□□□ -0.19
COL9A3-214ENST00000490398 LHFPL1Q86WI0 220 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms