RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 RANP62826 216 aaKnown RBP0.84□□□□□ -2.27
CPSF3-205ENST00000489629 RPL30P62888 115 aaKnown RBP0.84□□□□□ -2.27
CPSF3-205ENST00000489629 IFITM2Q01629 132 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 OR2F1Q13607 317 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 PMAIP1Q13794 54 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 UAP1Q16222 522 aaPredicted RBP0.84□□□□□ -2.27
CPSF3-205ENST00000489629 FAM201AQ5SY85 155 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 CCDC122Q5T0U0 273 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 GLT6D1Q7Z4J2 308 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 SLC51BQ86UW2 128 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 LHFPL5Q8TAF8 219 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 ANKRD7Q92527 254 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 SLC35B4Q969S0 331 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 C12orf43Q96C57 262 aaKnown RBP0.84□□□□□ -2.27
CPSF3-205ENST00000489629 PPP1R2P1Q96PQ5 205 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 TXNDC17Q9BRA2 123 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 Q9BRP9 147 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 MND1Q9BWT6 205 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 UCK1Q9HA47 277 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 CISHQ9NSE2 258 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 MYH11P35749 1972 aa0.84□□□□□ -2.28
CPSF3-205ENST00000489629 MICAL3Q7RTP6 2002 aa0.84□□□□□ -2.28
CPSF3-205ENST00000489629 DOCK3Q8IZD9 2030 aa0.84□□□□□ -2.28
CPSF3-205ENST00000489629 PLXND1Q9Y4D7 1925 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 MED1Q15648 1581 aaPredicted RBP0.83□□□□□ -2.28
CPSF3-205ENST00000489629 IGKV1D-43A0A0B4J1Z2 117 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 TMEM269A0A1B0GVZ9 245 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 OR4C45A6NMZ5 311 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 EEF1E1-BLOC1S5C9J1V9 151 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 FNDC10F2Z333 226 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 DCTN3O75935 186 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 NDUFB2O95178 105 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 TNNC2P02585 160 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 IGKV1-16P04430 117 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 TCRBP04435 133 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 BPGMP07738 259 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 FAM228BP0C875 321 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 MARCKSL1P49006 195 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 DEFA1P59665 94 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 MAGOHP61326 146 aaKnown RBP0.83□□□□□ -2.28
CPSF3-205ENST00000489629 FKBP1AP62942 108 aaKnown RBP0.83□□□□□ -2.28
CPSF3-205ENST00000489629 HOXC5Q00444 222 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 RUNX1Q01196 453 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 AESQ08117 197 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 GUK1Q16774 197 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 LPCAT4Q643R3 524 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 AGTRAPQ6RW13 159 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 CCDC121Q6ZUS5 278 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 SLC35F6Q8N357 371 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 OR51T1Q8NGJ9 327 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 OR13C8Q8NGS7 320 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 RNASE11Q8TAA1 199 aaKnown RBP0.83□□□□□ -2.28
CPSF3-205ENST00000489629 JOSD2Q8TAC2 188 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 ZNF675Q8TD23 568 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 SPACA4Q8TDM5 124 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 OPTNQ96CV9 577 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 CCDC42Q96M95 316 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 MRPS26Q9BYN8 205 aaKnown RBP0.83□□□□□ -2.28
CPSF3-205ENST00000489629 OR8D2Q9GZM6 311 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 GPR84Q9NQS5 396 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 PRO2289Q9P1D8 64 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 TAAR3PQ9P1P4 343 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 PRELID1Q9Y255 219 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 SNAPC4Q5SXM2 1469 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 SCN10AQ9Y5Y9 1956 aa0.83□□□□□ -2.28
CPSF3-205ENST00000489629 SETXQ7Z333 2677 aaKnown RBP0.82□□□□□ -2.28
CPSF3-205ENST00000489629 WRNQ14191 1432 aaPredicted RBP eCLIP0.82□□□□□ -2.28
CPSF3-205ENST00000489629 FN1P02751 2386 aaKnown RBP0.82□□□□□ -2.28
CPSF3-205ENST00000489629 GRIN2BQ13224 1484 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 A0A087WUJ7 227 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 A0A1B0GVG6 124 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 GRIFINA4D1Z8 144 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 TMEM235A6NFC5 223 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 RFPL4AA6NLU0 287 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 RFPL4AL1F8VTS6 287 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 GOLGA6L19H0YKK7 550 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 H3BRN7 92 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 H3BT86 120 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 I3L521 148 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 UBFD1O14562 309 aaKnown RBP0.82□□□□□ -2.28
CPSF3-205ENST00000489629 CHP2O43745 196 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 IFNA16P05015 189 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 S100A6P06703 90 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 CD24P25063 80 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 PEBP1P30086 187 aaKnown RBP0.82□□□□□ -2.28
CPSF3-205ENST00000489629 ALDH3A1P30838 453 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 CDKN2CP42773 168 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 SLCO1A2P46721 670 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 RPL27AP46776 148 aaKnown RBP0.82□□□□□ -2.28
CPSF3-205ENST00000489629 RPS20P60866 119 aaKnown RBP0.82□□□□□ -2.28
CPSF3-205ENST00000489629 BTN3A2P78410 334 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 KISS1Q15726 138 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 ZNF791Q3KP31 576 aaPredicted RBP0.82□□□□□ -2.28
CPSF3-205ENST00000489629 HIST2H3PS2Q5TEC6 136 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 KRTAP5-10Q6L8G5 202 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 C1orf158Q8N1D5 194 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 SLC22A24Q8N4F4 322 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 ZNF283Q8N7M2 679 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 OR1L8Q8NGR8 309 aa0.82□□□□□ -2.28
CPSF3-205ENST00000489629 PRAP1Q96NZ9 151 aa0.82□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms