RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 CDKL4Q5MAI5 379 aa0.82□□□□□ -2.28
PTPN4-212ENST00000488896 CLVS2Q5SYC1 327 aa0.82□□□□□ -2.28
PTPN4-212ENST00000488896 OGFRL1Q5TC84 451 aaPredicted RBP0.82□□□□□ -2.28
PTPN4-212ENST00000488896 LPCAT4Q643R3 524 aa0.82□□□□□ -2.28
PTPN4-212ENST00000488896 CLEC6AQ6EIG7 209 aa0.82□□□□□ -2.28
PTPN4-212ENST00000488896 C8orf74Q6P047 294 aa0.82□□□□□ -2.28
PTPN4-212ENST00000488896 GID4Q8IVV7 300 aa0.82□□□□□ -2.28
PTPN4-212ENST00000488896 IQCF2Q8IXL9 164 aa0.82□□□□□ -2.28
PTPN4-212ENST00000488896 TBC1D19Q8N5T2 526 aa0.82□□□□□ -2.28
PTPN4-212ENST00000488896 ACOT12Q8WYK0 555 aa0.82□□□□□ -2.28
PTPN4-212ENST00000488896 CPNE2Q96FN4 548 aaPredicted RBP0.82□□□□□ -2.28
PTPN4-212ENST00000488896 RETNLBQ9BQ08 111 aa0.82□□□□□ -2.28
PTPN4-212ENST00000488896 MRPS26Q9BYN8 205 aaKnown RBP0.82□□□□□ -2.28
PTPN4-212ENST00000488896 HRASLSQ9HDD0 168 aa0.82□□□□□ -2.28
PTPN4-212ENST00000488896 POLR1DQ9Y2S0 133 aa0.82□□□□□ -2.28
PTPN4-212ENST00000488896 KLK5Q9Y337 293 aaPredicted RBP0.82□□□□□ -2.28
PTPN4-212ENST00000488896 PXMP4Q9Y6I8 212 aa0.82□□□□□ -2.28
PTPN4-212ENST00000488896 V9GYY5 206 aaPredicted RBP0.82□□□□□ -2.28
PTPN4-212ENST00000488896 HEATR5BQ9P2D3 2071 aa0.82□□□□□ -2.28
PTPN4-212ENST00000488896 HEATR5AQ86XA9 2040 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 NOTCH1P46531 2555 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 IGHV3-64A0A075B6Q5 118 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 A0A087WUU8 490 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 TGIF2-C20orf24A0A0A6YYL0 155 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 LRRN3E7EW58 273 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 H3BT86 120 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 I3L521 148 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 COX7A2LO14548 114 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 NPYP01303 97 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 HLA-DRAP01903 254 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 CALB1P05937 261 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 TFPTP0C1Z6 253 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 FAM228BP0C875 321 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 DEFA4P12838 97 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 MAP2K4P45985 399 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 RAB13P51153 203 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 CXCR4P61073 352 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 TMEM258P61165 79 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 HOXC5Q00444 222 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 MED21Q13503 144 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 C1orf194Q5T5A4 169 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 FAM78BQ5VT40 261 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 SBSNQ6UWP8 590 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 LRRN1Q6UXK5 716 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 Q8N402 240 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 UBL4BQ8N7F7 174 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 MS4A6EQ96DS6 147 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 GNPNAT1Q96EK6 184 aaPredicted RBP0.81□□□□□ -2.28
PTPN4-212ENST00000488896 DIRAS2Q96HU8 199 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 Q96M85 177 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 IMMP2LQ96T52 175 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 GPR84Q9NQS5 396 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 PAQR5Q9NXK6 330 aaPredicted RBP0.81□□□□□ -2.28
PTPN4-212ENST00000488896 ANGPT4Q9Y264 503 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 LSM5Q9Y4Y9 91 aaKnown RBP0.81□□□□□ -2.28
PTPN4-212ENST00000488896 TIMM9Q9Y5J7 89 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 REREQ9P2R6 1566 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 A0A1W2PP64 1363 aa0.81□□□□□ -2.28
PTPN4-212ENST00000488896 GRIN2BQ13224 1484 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 OR6C6A6NF89 314 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 GGT3PA6NGU5 568 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 CXCR6O00574 342 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 TGOLN2O43493 480 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 KCNE1P15382 129 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 DDTP30046 118 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 S100A7P31151 101 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 G6PCP35575 357 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 RPL27AP46776 148 aaKnown RBP0.8□□□□□ -2.28
PTPN4-212ENST00000488896 HAAOP46952 286 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 EIF2B2P49770 351 aaKnown RBP0.8□□□□□ -2.28
PTPN4-212ENST00000488896 TAS2R20P59543 309 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 AP1S1P61966 158 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 TBPL1P62380 186 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 EBPQ15125 230 aaKnown RBP0.8□□□□□ -2.28
PTPN4-212ENST00000488896 BATFQ16520 125 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 SLC36A2Q495M3 483 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 CCDC122Q5T0U0 273 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 FAM19A5Q7Z5A7 132 aaPredicted RBP0.8□□□□□ -2.28
PTPN4-212ENST00000488896 TMEM156Q8N614 296 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 ZNF676Q8N7Q3 588 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 OR1L8Q8NGR8 309 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 PPP1R14BQ96C90 147 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 ARL5BQ96KC2 179 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 TMEM222Q9H0R3 208 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 RBM7Q9Y580 266 aaKnown RBP0.8□□□□□ -2.28
PTPN4-212ENST00000488896 CUL9Q8IWT3 2517 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 INTS1Q8N201 2190 aaKnown RBP0.8□□□□□ -2.28
PTPN4-212ENST00000488896 RIMS2Q9UQ26 1411 aa0.8□□□□□ -2.28
PTPN4-212ENST00000488896 TRBV6-5A0A0K0K1A5 114 aa0.79□□□□□ -2.28
PTPN4-212ENST00000488896 C9JCJ5 164 aa0.79□□□□□ -2.28
PTPN4-212ENST00000488896 PPBPP02775 128 aa0.79□□□□□ -2.28
PTPN4-212ENST00000488896 ISG15P05161 165 aa0.79□□□□□ -2.28
PTPN4-212ENST00000488896 CCR7P32248 378 aa0.79□□□□□ -2.28
PTPN4-212ENST00000488896 CSN1S1P47710 185 aa0.79□□□□□ -2.28
PTPN4-212ENST00000488896 DEFA1P59665 94 aa0.79□□□□□ -2.28
PTPN4-212ENST00000488896 RPS24P62847 133 aaKnown RBP0.79□□□□□ -2.28
PTPN4-212ENST00000488896 AKR1C1Q04828 323 aa0.79□□□□□ -2.28
PTPN4-212ENST00000488896 C9orf64Q5T6V5 341 aa0.79□□□□□ -2.28
PTPN4-212ENST00000488896 GPHB5Q86YW7 130 aa0.79□□□□□ -2.28
PTPN4-212ENST00000488896 UMODL1-AS1Q8N2C9 162 aa0.79□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms