RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 TSNAXQ99598 290 aaKnown RBP6.92□□□□□ -1.3
USP4-213ENST00000488520 RNF5Q99942 180 aa6.92□□□□□ -1.3
USP4-213ENST00000488520 MRPL20Q9BYC9 149 aaKnown RBP6.92□□□□□ -1.3
USP4-213ENST00000488520 FAM240BA0A1B0GVZ2 78 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 A0A1W2PPI3 338 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 FAM90A9PA6NNJ1 464 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 LYRM1O43325 122 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 PGLYRP1O75594 196 aaPredicted RBP6.91□□□□□ -1.3
USP4-213ENST00000488520 UPK1BO75841 260 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 ATG12O94817 140 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 OR2F2O95006 317 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 HRASP01112 189 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 RLN1P04808 185 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 SERPINE2P07093 398 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 CTSDP07339 412 aaPredicted RBP6.91□□□□□ -1.3
USP4-213ENST00000488520 ZNF735P0CB33 412 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 PF4V1P10720 104 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 ANXA3P12429 323 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 HOXD3P31249 432 aaPredicted RBP6.91□□□□□ -1.3
USP4-213ENST00000488520 DUTP33316 252 aaKnown RBP6.91□□□□□ -1.3
USP4-213ENST00000488520 SLURP1P55000 103 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 PIGPP57054 158 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 KRTAP10-11P60412 298 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 PHLDA2Q53GA4 152 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 C9orf152Q5JTZ5 239 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 LDLRAD2Q5SZI1 272 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 ZNF660Q6AZW8 331 aaPredicted RBP6.91□□□□□ -1.3
USP4-213ENST00000488520 ZNF818PQ6ZRF7 136 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 SGPP2Q8IWX5 399 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 SYT8Q8NBV8 401 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 OR5AN1Q8NGI8 311 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 OR4S2Q8NH73 311 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 RBM14Q96PK6 669 aaKnown RBP6.91□□□□□ -1.3
USP4-213ENST00000488520 SLC25A33Q9BSK2 321 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 PRSS22Q9GZN4 317 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 SLC2A8Q9NY64 477 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 FBXL7Q9UJT9 491 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 TCF19Q9Y242 345 aa6.91□□□□□ -1.3
USP4-213ENST00000488520 PIGBOS1A0A0B4J2F0 54 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 A6NDX4 124 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 H0YJW9 148 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 MPPED1O15442 326 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 B3GALNT1O75752 331 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 CRYZL1O95825 349 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 HPRT1P00492 218 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 AKR1C4P17516 323 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 VDAC2P45880 294 aaPredicted RBP6.9□□□□□ -1.3
USP4-213ENST00000488520 ERVK-16P61578 105 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 BLCAPP62952 87 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 EBI3Q14213 229 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 RBMS2Q15434 407 aaKnown RBP6.9□□□□□ -1.3
USP4-213ENST00000488520 MMDQ15546 238 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 VMA21Q3ZAQ7 101 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 TBC1D26Q86UD7 250 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 LHFPL1Q86WI0 220 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 SPAG16Q8N0X2 631 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 ZNF383Q8NA42 475 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 WFDC9Q8NEX5 89 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 OR5AU1Q8NGC0 362 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 OR13C8Q8NGS7 320 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 OR51H1Q8NH63 302 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 WIPF2Q8TF74 440 aaPredicted RBP6.9□□□□□ -1.3
USP4-213ENST00000488520 TRIM63Q969Q1 353 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 SDHCQ99643 169 aaPredicted RBP6.9□□□□□ -1.3
USP4-213ENST00000488520 LIN7CQ9NUP9 197 aaKnown RBP6.9□□□□□ -1.3
USP4-213ENST00000488520 GPR132Q9UNW8 380 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 MOB4Q9Y3A3 225 aa6.9□□□□□ -1.3
USP4-213ENST00000488520 C3orf85A0A1B0GTC6 90 aa6.89□□□□□ -1.31
USP4-213ENST00000488520 NBR2O15453 112 aa6.89□□□□□ -1.31
USP4-213ENST00000488520 PROP1O75360 226 aa6.89□□□□□ -1.31
USP4-213ENST00000488520 ACTL6BO94805 426 aa6.89□□□□□ -1.31
USP4-213ENST00000488520 F2RP25116 425 aa6.89□□□□□ -1.31
USP4-213ENST00000488520 LPAR6P43657 344 aa6.89□□□□□ -1.31
USP4-213ENST00000488520 CCR6P51684 374 aa6.89□□□□□ -1.31
USP4-213ENST00000488520 RAB25P57735 213 aa6.89□□□□□ -1.31
USP4-213ENST00000488520 TAS2R31P59538 309 aa6.89□□□□□ -1.31
USP4-213ENST00000488520 DHODHQ02127 395 aa6.89□□□□□ -1.31
USP4-213ENST00000488520 TRIM16LQ309B1 348 aa6.89□□□□□ -1.31
USP4-213ENST00000488520 OR2B11Q5JQS5 317 aa6.89□□□□□ -1.31
USP4-213ENST00000488520 LIN54Q6MZP7 749 aa6.89□□□□□ -1.31
USP4-213ENST00000488520 TMED4Q7Z7H5 227 aa6.89□□□□□ -1.31
USP4-213ENST00000488520 Q8N2B8 174 aa6.89□□□□□ -1.31
USP4-213ENST00000488520 DMBX1Q8NFW5 382 aa6.89□□□□□ -1.31
USP4-213ENST00000488520 RNASE11Q8TAA1 199 aaKnown RBP6.89□□□□□ -1.31
USP4-213ENST00000488520 VSTM2AQ8TAG5 236 aa6.89□□□□□ -1.31
USP4-213ENST00000488520 OSR1Q8TAX0 266 aaPredicted RBP6.89□□□□□ -1.31
USP4-213ENST00000488520 ENKURQ8TC29 256 aa6.89□□□□□ -1.31
USP4-213ENST00000488520 HARBI1Q96MB7 349 aa6.89□□□□□ -1.31
USP4-213ENST00000488520 FXYD6Q9H0Q3 95 aa6.89□□□□□ -1.31
USP4-213ENST00000488520 SLC2A9Q9NRM0 540 aa6.89□□□□□ -1.31
USP4-213ENST00000488520 SORL1Q92673 2214 aa6.88□□□□□ -1.31
USP4-213ENST00000488520 TCRBV4S1A1TA0A5B7 111 aa6.88□□□□□ -1.31
USP4-213ENST00000488520 LINC00473A8K010 186 aa6.88□□□□□ -1.31
USP4-213ENST00000488520 FGF16O43320 207 aa6.88□□□□□ -1.31
USP4-213ENST00000488520 CREBL2O60519 120 aaPredicted RBP6.88□□□□□ -1.31
USP4-213ENST00000488520 CNIH1O95406 144 aa6.88□□□□□ -1.31
USP4-213ENST00000488520 IGLV2-14P01704 120 aa6.88□□□□□ -1.31
USP4-213ENST00000488520 RPA2P15927 270 aa6.88□□□□□ -1.31
USP4-213ENST00000488520 NQO2P16083 231 aa6.88□□□□□ -1.31
USP4-213ENST00000488520 LINC00205P59089 165 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms