RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 LINC01619G3V211 115 aa10.71□□□□□ -0.69
SYNE1-226ENST00000488376 H3BMQ9 156 aa10.71□□□□□ -0.69
SYNE1-226ENST00000488376 PGLYRP1O75594 196 aaPredicted RBP10.71□□□□□ -0.69
SYNE1-226ENST00000488376 OR2A4O95047 310 aa10.71□□□□□ -0.69
SYNE1-226ENST00000488376 TRBV12-3P01733 135 aa10.71□□□□□ -0.69
SYNE1-226ENST00000488376 IL6RP08887 468 aaPredicted RBP10.71□□□□□ -0.69
SYNE1-226ENST00000488376 RCVRNP35243 200 aa10.71□□□□□ -0.69
SYNE1-226ENST00000488376 AADACL3Q5VUY0 350 aa10.71□□□□□ -0.69
SYNE1-226ENST00000488376 OR4A47Q6IF82 309 aa10.71□□□□□ -0.69
SYNE1-226ENST00000488376 MMD2Q8IY49 270 aa10.71□□□□□ -0.69
SYNE1-226ENST00000488376 ZBTB34Q8NCN2 500 aa10.71□□□□□ -0.69
SYNE1-226ENST00000488376 OR2A7Q96R45 310 aa10.71□□□□□ -0.69
SYNE1-226ENST00000488376 TINAGL1Q9GZM7 467 aaPredicted RBP10.71□□□□□ -0.69
SYNE1-226ENST00000488376 SLA2Q9H6Q3 261 aa10.71□□□□□ -0.69
SYNE1-226ENST00000488376 RGS5O15539 181 aa10.7□□□□□ -0.7
SYNE1-226ENST00000488376 OR9G9P0C7N8 305 aa10.7□□□□□ -0.7
SYNE1-226ENST00000488376 AREGP15514 252 aa10.7□□□□□ -0.7
SYNE1-226ENST00000488376 KIR2DS2P43631 304 aa10.7□□□□□ -0.7
SYNE1-226ENST00000488376 RPL5P46777 297 aaKnown RBP10.7□□□□□ -0.7
SYNE1-226ENST00000488376 TMBIM6P55061 237 aa10.7□□□□□ -0.7
SYNE1-226ENST00000488376 DGCR2P98153 550 aa10.7□□□□□ -0.7
SYNE1-226ENST00000488376 PHLDA2Q53GA4 152 aa10.7□□□□□ -0.7
SYNE1-226ENST00000488376 OR4D10Q8NGI6 311 aa10.7□□□□□ -0.7
SYNE1-226ENST00000488376 OR6F1Q8NGZ6 308 aa10.7□□□□□ -0.7
SYNE1-226ENST00000488376 RAB2BQ8WUD1 216 aa10.7□□□□□ -0.7
SYNE1-226ENST00000488376 DPF1Q92782 380 aa10.7□□□□□ -0.7
SYNE1-226ENST00000488376 ISOC1Q96CN7 298 aa10.7□□□□□ -0.7
SYNE1-226ENST00000488376 C13orf42A0A1B0GVH6 325 aa10.69□□□□□ -0.7
SYNE1-226ENST00000488376 H3BUA1 57 aa10.69□□□□□ -0.7
SYNE1-226ENST00000488376 MPPED1O15442 326 aa10.69□□□□□ -0.7
SYNE1-226ENST00000488376 RBFOX2O43251 390 aaKnown RBP eCLIP10.69□□□□□ -0.7
SYNE1-226ENST00000488376 ACTL6BO94805 426 aa10.69□□□□□ -0.7
SYNE1-226ENST00000488376 HRASP01112 189 aa10.69□□□□□ -0.7
SYNE1-226ENST00000488376 CD3DP04234 171 aa10.69□□□□□ -0.7
SYNE1-226ENST00000488376 HSPB1P04792 205 aaKnown RBP10.69□□□□□ -0.7
SYNE1-226ENST00000488376 CD40LGP29965 261 aa10.69□□□□□ -0.7
SYNE1-226ENST00000488376 TSPAN5P62079 268 aa10.69□□□□□ -0.7
SYNE1-226ENST00000488376 CATR1Q13166 79 aa10.69□□□□□ -0.7
SYNE1-226ENST00000488376 ZNF585BQ52M93 769 aa10.69□□□□□ -0.7
SYNE1-226ENST00000488376 C9orf66Q5T8R8 295 aa10.69□□□□□ -0.7
SYNE1-226ENST00000488376 FCAMRQ8WWV6 532 aa10.69□□□□□ -0.7
SYNE1-226ENST00000488376 TMEM68Q96MH6 324 aa10.69□□□□□ -0.7
SYNE1-226ENST00000488376 FYTTD1Q96QD9 318 aaKnown RBP10.69□□□□□ -0.7
SYNE1-226ENST00000488376 PRR25Q96S07 402 aa10.69□□□□□ -0.7
SYNE1-226ENST00000488376 AKIP1Q9NQ31 210 aa10.69□□□□□ -0.7
SYNE1-226ENST00000488376 CCDC59Q9P031 241 aaKnown RBP10.69□□□□□ -0.7
SYNE1-226ENST00000488376 OVOL1O14753 267 aa10.68□□□□□ -0.7
SYNE1-226ENST00000488376 HPRT1P00492 218 aa10.68□□□□□ -0.7
SYNE1-226ENST00000488376 REG1AP05451 166 aa10.68□□□□□ -0.7
SYNE1-226ENST00000488376 ZNF735P0CB33 412 aa10.68□□□□□ -0.7
SYNE1-226ENST00000488376 HLA-GP17693 338 aa10.68□□□□□ -0.7
SYNE1-226ENST00000488376 RPL27AP46776 148 aaKnown RBP10.68□□□□□ -0.7
SYNE1-226ENST00000488376 RPL8P62917 257 aaKnown RBP10.68□□□□□ -0.7
SYNE1-226ENST00000488376 RHOGP84095 191 aa10.68□□□□□ -0.7
SYNE1-226ENST00000488376 VAX1Q5SQQ9 334 aa10.68□□□□□ -0.7
SYNE1-226ENST00000488376 HAPLN4Q86UW8 402 aa10.68□□□□□ -0.7
SYNE1-226ENST00000488376 TTC9CQ8N5M4 171 aa10.68□□□□□ -0.7
SYNE1-226ENST00000488376 VSTM2AQ8TAG5 236 aa10.68□□□□□ -0.7
SYNE1-226ENST00000488376 SPIN2AQ99865 258 aa10.68□□□□□ -0.7
SYNE1-226ENST00000488376 SPIN2BQ9BPZ2 258 aa10.68□□□□□ -0.7
SYNE1-226ENST00000488376 GPR61Q9BZJ8 451 aa10.68□□□□□ -0.7
SYNE1-226ENST00000488376 HRASLSQ9HDD0 168 aa10.68□□□□□ -0.7
SYNE1-226ENST00000488376 TMEM140Q9NV12 185 aa10.68□□□□□ -0.7
SYNE1-226ENST00000488376 BET1LQ9NYM9 111 aa10.68□□□□□ -0.7
SYNE1-226ENST00000488376 MTFP1Q9UDX5 166 aa10.68□□□□□ -0.7
SYNE1-226ENST00000488376 CEPT1Q9Y6K0 416 aa10.68□□□□□ -0.7
SYNE1-226ENST00000488376 TRBV9A0A0B4J1U6 114 aa10.67□□□□□ -0.7
SYNE1-226ENST00000488376 GPR31O00270 319 aa10.67□□□□□ -0.7
SYNE1-226ENST00000488376 UPK2O00526 184 aa10.67□□□□□ -0.7
SYNE1-226ENST00000488376 CREBL2O60519 120 aaPredicted RBP10.67□□□□□ -0.7
SYNE1-226ENST00000488376 BRI3O95415 125 aa10.67□□□□□ -0.7
SYNE1-226ENST00000488376 NQO2P16083 231 aa10.67□□□□□ -0.7
SYNE1-226ENST00000488376 PI3P19957 117 aa10.67□□□□□ -0.7
SYNE1-226ENST00000488376 F2RP25116 425 aa10.67□□□□□ -0.7
SYNE1-226ENST00000488376 ECI1P42126 302 aa10.67□□□□□ -0.7
SYNE1-226ENST00000488376 LPAR6P43657 344 aa10.67□□□□□ -0.7
SYNE1-226ENST00000488376 TAS2R31P59538 309 aa10.67□□□□□ -0.7
SYNE1-226ENST00000488376 POU2AF1Q16633 256 aa10.67□□□□□ -0.7
SYNE1-226ENST00000488376 FAAP20Q6NZ36 180 aa10.67□□□□□ -0.7
SYNE1-226ENST00000488376 ZNF343Q6P1L6 599 aa10.67□□□□□ -0.7
SYNE1-226ENST00000488376 DGCR14Q96DF8 476 aaKnown RBP10.67□□□□□ -0.7
SYNE1-226ENST00000488376 RSRP1Q9BUV0 290 aa10.67□□□□□ -0.7
SYNE1-226ENST00000488376 SLIRPQ9GZT3 109 aaKnown RBP10.67□□□□□ -0.7
SYNE1-226ENST00000488376 PLEKHA2Q9HB19 425 aa10.67□□□□□ -0.7
SYNE1-226ENST00000488376 S4R3C0 116 aa10.67□□□□□ -0.7
SYNE1-226ENST00000488376 SAP30O75446 220 aa10.66□□□□□ -0.7
SYNE1-226ENST00000488376 OR2J3O76001 311 aa10.66□□□□□ -0.7
SYNE1-226ENST00000488376 MAS1LP35410 378 aa10.66□□□□□ -0.7
SYNE1-226ENST00000488376 G6PCP35575 357 aa10.66□□□□□ -0.7
SYNE1-226ENST00000488376 OR2B8PP59922 312 aa10.66□□□□□ -0.7
SYNE1-226ENST00000488376 DEFB121Q5J5C9 76 aa10.66□□□□□ -0.7
SYNE1-226ENST00000488376 ACSM6Q6P461 480 aa10.66□□□□□ -0.7
SYNE1-226ENST00000488376 TBC1D26Q86UD7 250 aa10.66□□□□□ -0.7
SYNE1-226ENST00000488376 DMBX1Q8NFW5 382 aa10.66□□□□□ -0.7
SYNE1-226ENST00000488376 MRGPRFQ96AM1 343 aa10.66□□□□□ -0.7
SYNE1-226ENST00000488376 BCL7BQ9BQE9 202 aa10.66□□□□□ -0.7
SYNE1-226ENST00000488376 SLC2A9Q9NRM0 540 aa10.66□□□□□ -0.7
SYNE1-226ENST00000488376 NSG2Q9Y328 171 aa10.66□□□□□ -0.7
SYNE1-226ENST00000488376 TNCP24821 2201 aa10.66□□□□□ -0.7
SYNE1-226ENST00000488376 A0A0G2JLM5 398 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms