RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 CDX1P47902 265 aaPredicted RBP11.5□□□□□ -0.57
USP4-212ENST00000486549 RAB9AP51151 201 aa11.5□□□□□ -0.57
USP4-212ENST00000486549 PUSL1Q8N0Z8 303 aaKnown RBP11.5□□□□□ -0.57
USP4-212ENST00000486549 OR5T1Q8NG75 326 aa11.5□□□□□ -0.57
USP4-212ENST00000486549 OR5M8Q8NGP6 311 aa11.5□□□□□ -0.57
USP4-212ENST00000486549 CD300LFQ8TDQ1 290 aa11.5□□□□□ -0.57
USP4-212ENST00000486549 GNB4Q9HAV0 340 aa11.5□□□□□ -0.57
USP4-212ENST00000486549 HRASLSQ9HDD0 168 aa11.5□□□□□ -0.57
USP4-212ENST00000486549 DPPA5A6NC42 116 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 GSTZ1O43708 216 aaPredicted RBP11.49□□□□□ -0.57
USP4-212ENST00000486549 AKAIN1P0CW23 69 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 NQO2P16083 231 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 PI3P19957 117 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 F2RP25116 425 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 CD40LGP29965 261 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 SLC6A1P30531 599 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 LPAR6P43657 344 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 UCP3P55916 312 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 RAB25P57735 213 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 TPPP2P59282 170 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 TAS2R31P59538 309 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 PYDC2Q56P42 97 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 ASPHD1Q5U4P2 390 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 OR4A47Q6IF82 309 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 REC114Q7Z4M0 266 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 TBC1D26Q86UD7 250 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 LHFPL1Q86WI0 220 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 ZNF491Q8N8L2 437 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 DMBX1Q8NFW5 382 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 TMEM167AQ8TBQ9 72 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 MYOZ3Q8TDC0 251 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 C4orf3Q8WVX3 66 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 DGCR14Q96DF8 476 aaKnown RBP11.49□□□□□ -0.57
USP4-212ENST00000486549 RAX2Q96IS3 184 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 SOSTQ9BQB4 213 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 VSIG4Q9Y279 399 aa11.49□□□□□ -0.57
USP4-212ENST00000486549 DISC1C4P0D8 188 aa11.48□□□□□ -0.57
USP4-212ENST00000486549 G3V4G9 280 aa11.48□□□□□ -0.57
USP4-212ENST00000486549 CCL24O00175 119 aa11.48□□□□□ -0.57
USP4-212ENST00000486549 TRGV3P03979 118 aa11.48□□□□□ -0.57
USP4-212ENST00000486549 MYCNOSP40205 109 aa11.48□□□□□ -0.57
USP4-212ENST00000486549 ERVK-16P61578 105 aa11.48□□□□□ -0.57
USP4-212ENST00000486549 KIAA0141Q14154 515 aaPredicted RBP11.48□□□□□ -0.57
USP4-212ENST00000486549 MEF2DQ14814 521 aa11.48□□□□□ -0.57
USP4-212ENST00000486549 FOXB2Q5VYV0 432 aa11.48□□□□□ -0.57
USP4-212ENST00000486549 MRPL41Q8IXM3 137 aaKnown RBP11.48□□□□□ -0.57
USP4-212ENST00000486549 LINC00482Q8N8I6 264 aa11.48□□□□□ -0.57
USP4-212ENST00000486549 OR4C16Q8NGL9 310 aa11.48□□□□□ -0.57
USP4-212ENST00000486549 UBE2E2Q96LR5 201 aa11.48□□□□□ -0.57
USP4-212ENST00000486549 FYTTD1Q96QD9 318 aaKnown RBP11.48□□□□□ -0.57
USP4-212ENST00000486549 AIFM2Q9BRQ8 373 aa11.48□□□□□ -0.57
USP4-212ENST00000486549 PLEKHA2Q9HB19 425 aa11.48□□□□□ -0.57
USP4-212ENST00000486549 SLC2A9Q9NRM0 540 aa11.48□□□□□ -0.57
USP4-212ENST00000486549 TMEM140Q9NV12 185 aa11.48□□□□□ -0.57
USP4-212ENST00000486549 COA4Q9NYJ1 87 aa11.48□□□□□ -0.57
USP4-212ENST00000486549 COMMD9Q9P000 198 aa11.48□□□□□ -0.57
USP4-212ENST00000486549 V9GYH0 126 aa11.48□□□□□ -0.57
USP4-212ENST00000486549 NOTCH3Q9UM47 2321 aa11.47□□□□□ -0.57
USP4-212ENST00000486549 IGHV3-11P01762 117 aa11.47□□□□□ -0.57
USP4-212ENST00000486549 ZNF735P0CB33 412 aa11.47□□□□□ -0.57
USP4-212ENST00000486549 MYOD1P15172 320 aa11.47□□□□□ -0.57
USP4-212ENST00000486549 RPL27AP46776 148 aaKnown RBP11.47□□□□□ -0.57
USP4-212ENST00000486549 RPL8P62917 257 aaKnown RBP11.47□□□□□ -0.57
USP4-212ENST00000486549 DEFA5Q01523 94 aa11.47□□□□□ -0.57
USP4-212ENST00000486549 OXLD1Q5BKU9 147 aa11.47□□□□□ -0.57
USP4-212ENST00000486549 OR13C8Q8NGS7 320 aa11.47□□□□□ -0.57
USP4-212ENST00000486549 TERB2Q8NHR7 220 aa11.47□□□□□ -0.57
USP4-212ENST00000486549 MARCH1Q8TCQ1 289 aa11.47□□□□□ -0.57
USP4-212ENST00000486549 TMEM68Q96MH6 324 aa11.47□□□□□ -0.57
USP4-212ENST00000486549 SPIN2AQ99865 258 aa11.47□□□□□ -0.57
USP4-212ENST00000486549 SPIN2BQ9BPZ2 258 aa11.47□□□□□ -0.57
USP4-212ENST00000486549 THAP7Q9BT49 309 aaPredicted RBP11.47□□□□□ -0.57
USP4-212ENST00000486549 ALX4Q9H161 411 aaPredicted RBP11.47□□□□□ -0.57
USP4-212ENST00000486549 BET1LQ9NYM9 111 aa11.47□□□□□ -0.57
USP4-212ENST00000486549 NDUFA13Q9P0J0 144 aa11.47□□□□□ -0.57
USP4-212ENST00000486549 TRAV3A0A0B4J244 114 aa11.46□□□□□ -0.57
USP4-212ENST00000486549 ANKRD20A5PA0PJZ0 165 aa11.46□□□□□ -0.57
USP4-212ENST00000486549 HMX3A6NHT5 357 aa11.46□□□□□ -0.57
USP4-212ENST00000486549 MARCH11A6NNE9 402 aa11.46□□□□□ -0.57
USP4-212ENST00000486549 KRASP01116 189 aa11.46□□□□□ -0.57
USP4-212ENST00000486549 IGLL1P15814 213 aa11.46□□□□□ -0.57
USP4-212ENST00000486549 MAS1LP35410 378 aa11.46□□□□□ -0.57
USP4-212ENST00000486549 G6PCP35575 357 aa11.46□□□□□ -0.57
USP4-212ENST00000486549 PIGPP57054 158 aa11.46□□□□□ -0.57
USP4-212ENST00000486549 ZNF585BQ52M93 769 aa11.46□□□□□ -0.57
USP4-212ENST00000486549 KPRPQ5T749 579 aaPredicted RBP11.46□□□□□ -0.57
USP4-212ENST00000486549 CCDC190Q86UF4 302 aa11.46□□□□□ -0.57
USP4-212ENST00000486549 OR11H1Q8NG94 326 aa11.46□□□□□ -0.57
USP4-212ENST00000486549 OR4A5Q8NH83 315 aa11.46□□□□□ -0.57
USP4-212ENST00000486549 ZFAND1Q8TCF1 268 aa11.46□□□□□ -0.57
USP4-212ENST00000486549 ZNF486Q96H40 463 aaPredicted RBP11.46□□□□□ -0.57
USP4-212ENST00000486549 P2RX4Q99571 388 aa11.46□□□□□ -0.57
USP4-212ENST00000486549 SLA2Q9H6Q3 261 aa11.46□□□□□ -0.57
USP4-212ENST00000486549 I3L521 148 aa11.45□□□□□ -0.58
USP4-212ENST00000486549 UPK2O00526 184 aa11.45□□□□□ -0.58
USP4-212ENST00000486549 IL6RP08887 468 aaPredicted RBP11.45□□□□□ -0.58
USP4-212ENST00000486549 OR9G9P0C7N8 305 aa11.45□□□□□ -0.58
USP4-212ENST00000486549 HLA-GP17693 338 aa11.45□□□□□ -0.58
USP4-212ENST00000486549 ZNF79Q15937 498 aa11.45□□□□□ -0.58
USP4-212ENST00000486549 POU2AF1Q16633 256 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms