RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 MOB3AQ96BX8 217 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 TMEM68Q96MH6 324 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 FYTTD1Q96QD9 318 aaKnown RBP6.35□□□□□ -1.39
USP40-216ENST00000485943 OR2A7Q96R45 310 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 SPIN2AQ99865 258 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 PRRT1Q99946 306 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 SPIN2BQ9BPZ2 258 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 HINT2Q9BX68 163 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 KLK11Q9UBX7 282 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 CEPT1Q9Y6K0 416 aa6.35□□□□□ -1.39
USP40-216ENST00000485943 IGHV7-81A0A0B4J1V7 117 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 IGKV1D-13A0A0B4J2D9 117 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 A0A0G2JLM5 398 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 LINC00473A8K010 186 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 TRGV3P03979 118 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 CD3DP04234 171 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 SAA1P0DJI8 122 aaPredicted RBP6.34□□□□□ -1.39
USP40-216ENST00000485943 IGKV1-13P0DP09 117 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 GNRHRP30968 328 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 UBE2KP61086 200 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 RPL23AP62750 156 aaKnown RBP6.34□□□□□ -1.39
USP40-216ENST00000485943 FOXE3Q13461 319 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 MSMO1Q15800 293 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 PRR31Q5SQ13 230 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 ZNF562Q6V9R5 426 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 IDO2Q6ZQW0 420 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 ZNF818PQ6ZRF7 136 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 ZNF695Q8IW36 515 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 TMEM229BQ8NBD8 167 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 CLRN3Q8NCR9 226 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 LFNGQ8NES3 379 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 OR4A16Q8NH70 328 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 DGCR14Q96DF8 476 aaKnown RBP6.34□□□□□ -1.39
USP40-216ENST00000485943 RRNAD1Q96FB5 475 aaKnown RBP6.34□□□□□ -1.39
USP40-216ENST00000485943 MS4A10Q96PG2 267 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 TSC22D3Q99576 134 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 HSPB9Q9BQS6 159 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 FAM103A1Q9BTL3 118 aaKnown RBP6.34□□□□□ -1.39
USP40-216ENST00000485943 SLA2Q9H6Q3 261 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 ENY2Q9NPA8 101 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 ZMAT5Q9UDW3 170 aaKnown RBP6.34□□□□□ -1.39
USP40-216ENST00000485943 MTFP1Q9UDX5 166 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 KCNIP3Q9Y2W7 256 aa6.34□□□□□ -1.39
USP40-216ENST00000485943 PIGBOS1A0A0B4J2F0 54 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 G3V318 75 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 KBTBD11O94819 623 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 TSPAN15O95858 294 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 AMY1AP04745 511 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 APELAP0DMC3 54 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 ANXA3P12429 323 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 RPA2P15927 270 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 TNFSF8P32971 234 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 MAS1LP35410 378 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 RPL27AP46776 148 aaKnown RBP6.33□□□□□ -1.4
USP40-216ENST00000485943 LINC00205P59089 165 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 TAS2R31P59538 309 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 RPL8P62917 257 aaKnown RBP6.33□□□□□ -1.4
USP40-216ENST00000485943 DGCR2P98153 550 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 TATDN3Q17R31 274 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 VAX1Q5SQQ9 334 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 DHRS11Q6UWP2 260 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 LCNL1Q6ZST4 164 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 H2BFWTQ7Z2G1 175 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 Q8N402 240 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 OR5T1Q8NG75 326 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 OR4A5Q8NH83 315 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 SMIM4Q8WVI0 70 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 ZNF486Q96H40 463 aaPredicted RBP6.33□□□□□ -1.4
USP40-216ENST00000485943 OR5B12Q96R08 314 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 THAP7Q9BT49 309 aaPredicted RBP6.33□□□□□ -1.4
USP40-216ENST00000485943 MCRIP2Q9BUT9 160 aaKnown RBP6.33□□□□□ -1.4
USP40-216ENST00000485943 TINAGL1Q9GZM7 467 aaPredicted RBP6.33□□□□□ -1.4
USP40-216ENST00000485943 FKBP11Q9NYL4 201 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 VSIG4Q9Y279 399 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 STAB1Q9NY15 2570 aa6.33□□□□□ -1.4
USP40-216ENST00000485943 MSGN1A6NI15 193 aa6.32□□□□□ -1.4
USP40-216ENST00000485943 CTDSPLO15194 276 aa6.32□□□□□ -1.4
USP40-216ENST00000485943 PGLYRP1O75594 196 aaPredicted RBP6.32□□□□□ -1.4
USP40-216ENST00000485943 DUS4LO95620 317 aaKnown RBP6.32□□□□□ -1.4
USP40-216ENST00000485943 KRASP01116 189 aa6.32□□□□□ -1.4
USP40-216ENST00000485943 IGF1P05019 195 aa6.32□□□□□ -1.4
USP40-216ENST00000485943 F2RP25116 425 aa6.32□□□□□ -1.4
USP40-216ENST00000485943 MYCNOSP40205 109 aa6.32□□□□□ -1.4
USP40-216ENST00000485943 LPAR6P43657 344 aa6.32□□□□□ -1.4
USP40-216ENST00000485943 PIGPP57054 158 aa6.32□□□□□ -1.4
USP40-216ENST00000485943 CD83Q01151 205 aa6.32□□□□□ -1.4
USP40-216ENST00000485943 AKIRIN2Q53H80 203 aa6.32□□□□□ -1.4
USP40-216ENST00000485943 HIST2H2BDQ6DRA6 164 aa6.32□□□□□ -1.4
USP40-216ENST00000485943 TBC1D26Q86UD7 250 aa6.32□□□□□ -1.4
USP40-216ENST00000485943 SGPP2Q8IWX5 399 aa6.32□□□□□ -1.4
USP40-216ENST00000485943 VKORC1L1Q8N0U8 176 aa6.32□□□□□ -1.4
USP40-216ENST00000485943 TERB2Q8NHR7 220 aa6.32□□□□□ -1.4
USP40-216ENST00000485943 SRSF12Q8WXF0 261 aaKnown RBP6.32□□□□□ -1.4
USP40-216ENST00000485943 RBMXL1Q96E39 390 aaKnown RBP6.32□□□□□ -1.4
USP40-216ENST00000485943 RITA1Q96K30 269 aa6.32□□□□□ -1.4
USP40-216ENST00000485943 TMEM56Q96MV1 263 aa6.32□□□□□ -1.4
USP40-216ENST00000485943 ABHD1Q96SE0 405 aa6.32□□□□□ -1.4
USP40-216ENST00000485943 GPHA2Q96T91 129 aa6.32□□□□□ -1.4
USP40-216ENST00000485943 SLIRPQ9GZT3 109 aaKnown RBP6.32□□□□□ -1.4
USP40-216ENST00000485943 FXYD6Q9H0Q3 95 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms