RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 EDN2P20800 178 aa16.35■□□□□ 0.21
USP40-215ENST00000484528 RPL27AP46776 148 aaKnown RBP16.35■□□□□ 0.21
USP40-215ENST00000484528 IDNKQ5T6J7 187 aa16.35■□□□□ 0.21
USP40-215ENST00000484528 ADAMTSL5Q6ZMM2 481 aa16.35■□□□□ 0.21
USP40-215ENST00000484528 BEST4Q8NFU0 473 aa16.35■□□□□ 0.21
USP40-215ENST00000484528 SECTM1Q8WVN6 248 aa16.35■□□□□ 0.21
USP40-215ENST00000484528 OR2A7Q96R45 310 aa16.35■□□□□ 0.21
USP40-215ENST00000484528 TUBA4BQ9H853 241 aa16.35■□□□□ 0.21
USP40-215ENST00000484528 CCL28Q9NRJ3 127 aa16.35■□□□□ 0.21
USP40-215ENST00000484528 SIGLEC8Q9NYZ4 499 aa16.35■□□□□ 0.21
USP40-215ENST00000484528 S4R3C0 116 aa16.35■□□□□ 0.21
USP40-215ENST00000484528 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.34■□□□□ 0.21
USP40-215ENST00000484528 A0A1B0GW64 132 aa16.34■□□□□ 0.21
USP40-215ENST00000484528 DPPA5A6NC42 116 aa16.34■□□□□ 0.21
USP40-215ENST00000484528 E7EUB6 86 aa16.34■□□□□ 0.21
USP40-215ENST00000484528 IGHV3-23P01764 117 aa16.34■□□□□ 0.21
USP40-215ENST00000484528 MYOD1P15172 320 aa16.34■□□□□ 0.21
USP40-215ENST00000484528 HAGHQ16775 308 aa16.34■□□□□ 0.21
USP40-215ENST00000484528 ZNF773Q6PK81 442 aa16.34■□□□□ 0.21
USP40-215ENST00000484528 PUSL1Q8N0Z8 303 aaKnown RBP16.34■□□□□ 0.21
USP40-215ENST00000484528 TMEM167AQ8TBQ9 72 aa16.34■□□□□ 0.21
USP40-215ENST00000484528 ZNF257Q9Y2Q1 563 aa16.34■□□□□ 0.21
USP40-215ENST00000484528 AREGP15514 252 aa16.33■□□□□ 0.2
USP40-215ENST00000484528 FCGR2CP31995 323 aa16.33■□□□□ 0.2
USP40-215ENST00000484528 NEDD8Q15843 81 aa16.33■□□□□ 0.2
USP40-215ENST00000484528 CD300EQ496F6 205 aaPredicted RBP16.33■□□□□ 0.2
USP40-215ENST00000484528 SLC25A42Q86VD7 318 aa16.33■□□□□ 0.2
USP40-215ENST00000484528 OR13F1Q8NGS4 319 aa16.33■□□□□ 0.2
USP40-215ENST00000484528 VSTM2AQ8TAG5 236 aa16.33■□□□□ 0.2
USP40-215ENST00000484528 SPATA25Q9BR10 227 aa16.33■□□□□ 0.2
USP40-215ENST00000484528 EDA2RQ9HAV5 297 aa16.33■□□□□ 0.2
USP40-215ENST00000484528 PLEKHA3Q9HB20 300 aa16.33■□□□□ 0.2
USP40-215ENST00000484528 FBXL7Q9UJT9 491 aa16.33■□□□□ 0.2
USP40-215ENST00000484528 ETV7Q9Y603 341 aa16.33■□□□□ 0.2
USP40-215ENST00000484528 SELENOKQ9Y6D0 94 aa16.33■□□□□ 0.2
USP40-215ENST00000484528 MECP2P51608 486 aaKnown RBP16.32■□□□□ 0.2
USP40-215ENST00000484528 ZNF66Q6ZN08 573 aa16.32■□□□□ 0.2
USP40-215ENST00000484528 DYNLRB2Q8TF09 96 aa16.32■□□□□ 0.2
USP40-215ENST00000484528 ISOC1Q96CN7 298 aa16.32■□□□□ 0.2
USP40-215ENST00000484528 YTHDF1Q9BYJ9 559 aaKnown RBP16.32■□□□□ 0.2
USP40-215ENST00000484528 NPIPB5A8MRT5 1133 aa16.31■□□□□ 0.2
USP40-215ENST00000484528 AIREO43918 545 aa16.31■□□□□ 0.2
USP40-215ENST00000484528 NDUFB8O95169 186 aa16.31■□□□□ 0.2
USP40-215ENST00000484528 REG1AP05451 166 aa16.31■□□□□ 0.2
USP40-215ENST00000484528 ZNF735P0CB33 412 aa16.31■□□□□ 0.2
USP40-215ENST00000484528 FXYD4P59646 89 aa16.31■□□□□ 0.2
USP40-215ENST00000484528 CD81P60033 236 aa16.31■□□□□ 0.2
USP40-215ENST00000484528 HOGA1Q86XE5 327 aa16.31■□□□□ 0.2
USP40-215ENST00000484528 RETNQ9HD89 108 aa16.31■□□□□ 0.2
USP40-215ENST00000484528 SLC2A9Q9NRM0 540 aa16.31■□□□□ 0.2
USP40-215ENST00000484528 DMRT1Q9Y5R6 373 aa16.31■□□□□ 0.2
USP40-215ENST00000484528 MEIS3P1A6NDR6 274 aa16.3■□□□□ 0.2
USP40-215ENST00000484528 OR2C1O95371 312 aa16.3■□□□□ 0.2
USP40-215ENST00000484528 HRASP01112 189 aa16.3■□□□□ 0.2
USP40-215ENST00000484528 PPYP01298 95 aa16.3■□□□□ 0.2
USP40-215ENST00000484528 RPL8P62917 257 aaKnown RBP16.3■□□□□ 0.2
USP40-215ENST00000484528 SPAG16Q8N0X2 631 aa16.3■□□□□ 0.2
USP40-215ENST00000484528 OR2K2Q8NGT1 345 aa16.3■□□□□ 0.2
USP40-215ENST00000484528 KCTD12Q96CX2 325 aaKnown RBP16.3■□□□□ 0.2
USP40-215ENST00000484528 CCDC140Q96MF4 163 aa16.3■□□□□ 0.2
USP40-215ENST00000484528 FANCD2OSQ96PS1 177 aa16.3■□□□□ 0.2
USP40-215ENST00000484528 SLC5A7Q9GZV3 580 aa16.3■□□□□ 0.2
USP40-215ENST00000484528 WFDC10AQ9H1F0 79 aa16.3■□□□□ 0.2
USP40-215ENST00000484528 AUNIPQ9H7T9 357 aa16.3■□□□□ 0.2
USP40-215ENST00000484528 C2orf70A6NJV1 201 aa16.29■□□□□ 0.2
USP40-215ENST00000484528 SULT1C2O00338 296 aa16.29■□□□□ 0.2
USP40-215ENST00000484528 GGCTO75223 188 aaKnown RBP16.29■□□□□ 0.2
USP40-215ENST00000484528 CD7P09564 240 aa16.29■□□□□ 0.2
USP40-215ENST00000484528 MAS1LP35410 378 aa16.29■□□□□ 0.2
USP40-215ENST00000484528 KIR2DS2P43631 304 aa16.29■□□□□ 0.2
USP40-215ENST00000484528 SCAND1P57086 179 aa16.29■□□□□ 0.2
USP40-215ENST00000484528 TIMM50Q3ZCQ8 353 aa16.29■□□□□ 0.2
USP40-215ENST00000484528 OR4A47Q6IF82 309 aa16.29■□□□□ 0.2
USP40-215ENST00000484528 CLEC19AQ6UXS0 136 aa16.29■□□□□ 0.2
USP40-215ENST00000484528 CACNG8Q8WXS5 425 aa16.29■□□□□ 0.2
USP40-215ENST00000484528 NEURL2Q9BR09 285 aa16.29■□□□□ 0.2
USP40-215ENST00000484528 HRASLSQ9HDD0 168 aa16.29■□□□□ 0.2
USP40-215ENST00000484528 FOLR2P14207 255 aa16.28■□□□□ 0.2
USP40-215ENST00000484528 HLA-GP17693 338 aa16.28■□□□□ 0.2
USP40-215ENST00000484528 PSMB6P28072 239 aa16.28■□□□□ 0.2
USP40-215ENST00000484528 ARL3P36405 182 aa16.28■□□□□ 0.2
USP40-215ENST00000484528 GUCA2BQ16661 112 aa16.28■□□□□ 0.2
USP40-215ENST00000484528 TMEM17Q86X19 198 aa16.28■□□□□ 0.2
USP40-215ENST00000484528 FAM110AQ9BQ89 295 aa16.28■□□□□ 0.2
USP40-215ENST00000484528 DIABLOQ9NR28 239 aa16.28■□□□□ 0.2
USP40-215ENST00000484528 TRAV3A0A0B4J244 114 aa16.27■□□□□ 0.2
USP40-215ENST00000484528 CGB1A6NKQ9 187 aa16.27■□□□□ 0.2
USP40-215ENST00000484528 ZNF785A8K8V0 405 aa16.27■□□□□ 0.2
USP40-215ENST00000484528 TPPPO94811 219 aa16.27■□□□□ 0.2
USP40-215ENST00000484528 TGFBR1P36897 503 aa16.27■□□□□ 0.2
USP40-215ENST00000484528 DEFB114Q30KQ6 69 aa16.27■□□□□ 0.2
USP40-215ENST00000484528 DEFB125Q8N687 156 aa16.27■□□□□ 0.2
USP40-215ENST00000484528 OR51H1Q8NH63 302 aa16.27■□□□□ 0.2
USP40-215ENST00000484528 WDR89Q96FK6 387 aaPredicted RBP16.27■□□□□ 0.2
USP40-215ENST00000484528 SLC2A8Q9NY64 477 aa16.27■□□□□ 0.2
USP40-215ENST00000484528 BET1LQ9NYM9 111 aa16.27■□□□□ 0.2
USP40-215ENST00000484528 CEPT1Q9Y6K0 416 aa16.27■□□□□ 0.2
USP40-215ENST00000484528 RYR2Q92736 4967 aa16.27■□□□□ 0.19
USP40-215ENST00000484528 CSMD3Q7Z407 3707 aa16.27■□□□□ 0.19
USP40-215ENST00000484528 A0A0A6YYH2 397 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms