RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 SUMO1P63165 101 aaKnown RBP11.1□□□□□ -0.63
USP40-214ENST00000483519 RPEL1Q2QD12 228 aa11.1□□□□□ -0.63
USP40-214ENST00000483519 MCEMP1Q8IX19 187 aa11.1□□□□□ -0.63
USP40-214ENST00000483519 WDR31Q8NA23 367 aa11.1□□□□□ -0.63
USP40-214ENST00000483519 SLC45A2Q9UMX9 530 aa11.1□□□□□ -0.63
USP40-214ENST00000483519 TMEM30CPA0ZSE6 113 aa11.09□□□□□ -0.63
USP40-214ENST00000483519 DIRC3C9JPN6 131 aa11.09□□□□□ -0.63
USP40-214ENST00000483519 GDF9O60383 454 aa11.09□□□□□ -0.63
USP40-214ENST00000483519 NXPH2O95156 264 aa11.09□□□□□ -0.63
USP40-214ENST00000483519 IER3P46695 156 aa11.09□□□□□ -0.63
USP40-214ENST00000483519 KRTDAPP60985 99 aa11.09□□□□□ -0.63
USP40-214ENST00000483519 ZNF146Q15072 292 aa11.09□□□□□ -0.63
USP40-214ENST00000483519 C5orf30Q96GV9 206 aa11.09□□□□□ -0.63
USP40-214ENST00000483519 GNB1LQ9BYB4 327 aa11.09□□□□□ -0.63
USP40-214ENST00000483519 DNAJC4Q9NNZ3 241 aa11.09□□□□□ -0.63
USP40-214ENST00000483519 LY96Q9Y6Y9 160 aa11.09□□□□□ -0.63
USP40-214ENST00000483519 C9JCJ5 164 aa11.09□□□□□ -0.63
USP40-214ENST00000483519 MMP23AO75900 390 aa11.09□□□□□ -0.63
USP40-214ENST00000483519 DUSP3P51452 185 aaPredicted RBP11.09□□□□□ -0.63
USP40-214ENST00000483519 FOXG1P55316 489 aaPredicted RBP11.09□□□□□ -0.63
USP40-214ENST00000483519 ERVK11-1P61568 191 aa11.09□□□□□ -0.63
USP40-214ENST00000483519 C1orf174Q8IYL3 243 aa11.09□□□□□ -0.63
USP40-214ENST00000483519 ZNF703Q9H7S9 590 aaPredicted RBP11.09□□□□□ -0.63
USP40-214ENST00000483519 UQCR10Q9UDW1 63 aa11.09□□□□□ -0.63
USP40-214ENST00000483519 FBXL7Q9UJT9 491 aa11.09□□□□□ -0.63
USP40-214ENST00000483519 SLC17A3O00476 420 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 TCF21O43680 179 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 MT-CO2P00403 227 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 MT-ND6P03923 174 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 GPX1P07203 203 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 TFPI2P48307 235 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 HTD2P86397 168 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 TUSC5Q8IXB3 177 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 SCCPDHQ8NBX0 429 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 CIDEAO60543 219 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 CD59P13987 128 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 BRWD1-AS2P59051 145 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 RPL31P62899 125 aaKnown RBP11.08□□□□□ -0.64
USP40-214ENST00000483519 IGFBP7Q16270 282 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 HLA-DRB5Q30154 266 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 ZNF718Q3SXZ3 478 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 SPATA45Q537H7 98 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 FBXW9Q5XUX1 488 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 APH1AQ96BI3 265 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 FAM103A1Q9BTL3 118 aaKnown RBP11.08□□□□□ -0.64
USP40-214ENST00000483519 MSL2Q9HCI7 577 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 ASCL3Q9NQ33 180 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 ZFHX2Q9C0A1 2572 aaPredicted RBP11.08□□□□□ -0.64
USP40-214ENST00000483519 PTPRZ1P23471 2315 aaPredicted RBP11.08□□□□□ -0.64
USP40-214ENST00000483519 OOEPA6NGQ2 149 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 C12orf77C9JDV5 145 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 F2Z2F3 143 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 CTRLP40313 264 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 SRYQ05066 204 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 ESPL1Q14674 2120 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 OR10J3Q5JRS4 329 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 MMD2Q8IY49 270 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 OR52L2PQ8NGH6 319 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 UHRF2Q96PU4 802 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 DEPPQ9NTK1 212 aa11.08□□□□□ -0.64
USP40-214ENST00000483519 TBL2Q9Y4P3 447 aaKnown RBP11.08□□□□□ -0.64
USP40-214ENST00000483519 K7EN84 100 aa11.07□□□□□ -0.64
USP40-214ENST00000483519 COX19Q49B96 90 aa11.07□□□□□ -0.64
USP40-214ENST00000483519 TREML4Q6UXN2 200 aa11.07□□□□□ -0.64
USP40-214ENST00000483519 C11orf52Q96A22 123 aa11.07□□□□□ -0.64
USP40-214ENST00000483519 STARD4Q96DR4 205 aa11.07□□□□□ -0.64
USP40-214ENST00000483519 HSD17B10Q99714 261 aaKnown RBP11.07□□□□□ -0.64
USP40-214ENST00000483519 GNB4Q9HAV0 340 aa11.07□□□□□ -0.64
USP40-214ENST00000483519 YTHDF2Q9Y5A9 579 aaKnown RBP11.07□□□□□ -0.64
USP40-214ENST00000483519 SAA2-SAA4A0A096LPE2 208 aa11.07□□□□□ -0.64
USP40-214ENST00000483519 C20orf202A1L168 122 aa11.07□□□□□ -0.64
USP40-214ENST00000483519 AMTP48728 403 aa11.07□□□□□ -0.64
USP40-214ENST00000483519 PSG7Q13046 419 aa11.07□□□□□ -0.64
USP40-214ENST00000483519 MMDQ15546 238 aa11.07□□□□□ -0.64
USP40-214ENST00000483519 DCAF12Q5T6F0 453 aa11.07□□□□□ -0.64
USP40-214ENST00000483519 WDR86Q86TI4 376 aa11.07□□□□□ -0.64
USP40-214ENST00000483519 KCNS1Q96KK3 526 aa11.07□□□□□ -0.64
USP40-214ENST00000483519 TXN2Q99757 166 aa11.07□□□□□ -0.64
USP40-214ENST00000483519 SFXN3Q9BWM7 321 aa11.07□□□□□ -0.64
USP40-214ENST00000483519 GGTLC1Q9BX51 225 aa11.07□□□□□ -0.64
USP40-214ENST00000483519 FOXJ2Q9P0K8 574 aa11.07□□□□□ -0.64
USP40-214ENST00000483519 BOKQ9UMX3 212 aaPredicted RBP11.07□□□□□ -0.64
USP40-214ENST00000483519 TRGV10A0A0A0MS01 117 aa11.06□□□□□ -0.64
USP40-214ENST00000483519 ZNF253O75346 499 aa11.06□□□□□ -0.64
USP40-214ENST00000483519 WISP2O76076 250 aa11.06□□□□□ -0.64
USP40-214ENST00000483519 HAND1O96004 215 aa11.06□□□□□ -0.64
USP40-214ENST00000483519 HBZP02008 142 aa11.06□□□□□ -0.64
USP40-214ENST00000483519 GCHFRP30047 84 aa11.06□□□□□ -0.64
USP40-214ENST00000483519 HNRNPA3P51991 378 aaKnown RBP11.06□□□□□ -0.64
USP40-214ENST00000483519 SPATA46Q5T0L3 261 aa11.06□□□□□ -0.64
USP40-214ENST00000483519 Q8N976 141 aa11.06□□□□□ -0.64
USP40-214ENST00000483519 OR2M7Q8NG81 312 aa11.06□□□□□ -0.64
USP40-214ENST00000483519 EAF1Q96JC9 268 aaPredicted RBP11.06□□□□□ -0.64
USP40-214ENST00000483519 MGST2Q99735 147 aa11.06□□□□□ -0.64
USP40-214ENST00000483519 NRN1Q9NPD7 142 aa11.06□□□□□ -0.64
USP40-214ENST00000483519 NAT8BQ9UHF3 227 aa11.06□□□□□ -0.64
USP40-214ENST00000483519 DIDO1Q9BTC0 2240 aaKnown RBP11.06□□□□□ -0.64
USP40-214ENST00000483519 RRHO14718 337 aa11.06□□□□□ -0.64
USP40-214ENST00000483519 CDIPTO14735 213 aa11.06□□□□□ -0.64
USP40-214ENST00000483519 IGHEP01854 428 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms