RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 FBXL17Q9UF56 701 aa12.7□□□□□ -0.38
VIM-204ENST00000478746 TRBV6-7A0A0A0MS04 114 aa12.69□□□□□ -0.38
VIM-204ENST00000478746 NPIPB5A8MRT5 1133 aa12.69□□□□□ -0.38
VIM-204ENST00000478746 FOXI3A8MTJ6 420 aaPredicted RBP12.69□□□□□ -0.38
VIM-204ENST00000478746 CLEC3BP05452 202 aa12.69□□□□□ -0.38
VIM-204ENST00000478746 GSTT2P0CG29 244 aa12.69□□□□□ -0.38
VIM-204ENST00000478746 GSTT2BP0CG30 244 aa12.69□□□□□ -0.38
VIM-204ENST00000478746 NANOS2P60321 138 aaKnown RBP12.69□□□□□ -0.38
VIM-204ENST00000478746 GABARAPL2P60520 117 aa12.69□□□□□ -0.38
VIM-204ENST00000478746 P2RY14Q15391 338 aa12.69□□□□□ -0.38
VIM-204ENST00000478746 RBMS2Q15434 407 aaKnown RBP12.69□□□□□ -0.38
VIM-204ENST00000478746 C11orf45Q8TAV5 145 aa12.69□□□□□ -0.38
VIM-204ENST00000478746 FANCD2OSQ96PS1 177 aa12.69□□□□□ -0.38
VIM-204ENST00000478746 CCDC90BQ9GZT6 254 aa12.69□□□□□ -0.38
VIM-204ENST00000478746 MFFQ9GZY8 342 aa12.69□□□□□ -0.38
VIM-204ENST00000478746 C5orf66Q9H5L9 145 aa12.69□□□□□ -0.38
VIM-204ENST00000478746 PLGRKTQ9HBL7 147 aa12.69□□□□□ -0.38
VIM-204ENST00000478746 MUC4Q99102 2169 aa12.69□□□□□ -0.38
VIM-204ENST00000478746 TEX22C9J3V5 150 aa12.68□□□□□ -0.38
VIM-204ENST00000478746 IL6RP08887 468 aaPredicted RBP12.68□□□□□ -0.38
VIM-204ENST00000478746 CTRB1P17538 263 aa12.68□□□□□ -0.38
VIM-204ENST00000478746 GALP22466 123 aa12.68□□□□□ -0.38
VIM-204ENST00000478746 MRPS15P82914 257 aaKnown RBP12.68□□□□□ -0.38
VIM-204ENST00000478746 MED22Q15528 200 aa12.68□□□□□ -0.38
VIM-204ENST00000478746 CTRB2Q6GPI1 263 aa12.68□□□□□ -0.38
VIM-204ENST00000478746 UNQ9165/PRO28630Q6UXU0 137 aa12.68□□□□□ -0.38
VIM-204ENST00000478746 C2CD4CQ8TF44 421 aa12.68□□□□□ -0.38
VIM-204ENST00000478746 FYTTD1Q96QD9 318 aaKnown RBP12.68□□□□□ -0.38
VIM-204ENST00000478746 CABLES2Q9BTV7 478 aa12.68□□□□□ -0.38
VIM-204ENST00000478746 OR51E2Q9H255 320 aa12.68□□□□□ -0.38
VIM-204ENST00000478746 SLC2A9Q9NRM0 540 aa12.68□□□□□ -0.38
VIM-204ENST00000478746 TRBV7-1A0A0A6YYK4 115 aa12.67□□□□□ -0.38
VIM-204ENST00000478746 FCGR3BO75015 233 aa12.67□□□□□ -0.38
VIM-204ENST00000478746 DHFRP00374 187 aa12.67□□□□□ -0.38
VIM-204ENST00000478746 UCHL1P09936 223 aa12.67□□□□□ -0.38
VIM-204ENST00000478746 MED14OSP0DP75 135 aa12.67□□□□□ -0.38
VIM-204ENST00000478746 RPL27AP46776 148 aaKnown RBP12.67□□□□□ -0.38
VIM-204ENST00000478746 ELLP55199 621 aaPredicted RBP12.67□□□□□ -0.38
VIM-204ENST00000478746 TCTAP57738 103 aa12.67□□□□□ -0.38
VIM-204ENST00000478746 PLAC9Q5JTB6 97 aa12.67□□□□□ -0.38
VIM-204ENST00000478746 LINC00336Q6ZUF6 198 aa12.67□□□□□ -0.38
VIM-204ENST00000478746 PRSS48Q7RTY5 328 aa12.67□□□□□ -0.38
VIM-204ENST00000478746 OR56B1Q8NGI3 324 aa12.67□□□□□ -0.38
VIM-204ENST00000478746 GALNT14Q96FL9 552 aa12.67□□□□□ -0.38
VIM-204ENST00000478746 GINS4Q9BRT9 223 aa12.67□□□□□ -0.38
VIM-204ENST00000478746 MAP6D1Q9H9H5 199 aa12.67□□□□□ -0.38
VIM-204ENST00000478746 UFC1Q9Y3C8 167 aa12.67□□□□□ -0.38
VIM-204ENST00000478746 E7EUB6 86 aa12.66□□□□□ -0.38
VIM-204ENST00000478746 SLC17A2O00624 439 aa12.66□□□□□ -0.38
VIM-204ENST00000478746 TSPAN4O14817 238 aa12.66□□□□□ -0.38
VIM-204ENST00000478746 TNFAIP8O95379 198 aa12.66□□□□□ -0.38
VIM-204ENST00000478746 DIRAS3O95661 229 aa12.66□□□□□ -0.38
VIM-204ENST00000478746 CRYGCP07315 174 aa12.66□□□□□ -0.38
VIM-204ENST00000478746 MYOD1P15172 320 aa12.66□□□□□ -0.38
VIM-204ENST00000478746 HIST1H1BP16401 226 aaKnown RBP12.66□□□□□ -0.38
VIM-204ENST00000478746 PSMB6P28072 239 aa12.66□□□□□ -0.38
VIM-204ENST00000478746 FCGR2BP31994 310 aaPredicted RBP12.66□□□□□ -0.38
VIM-204ENST00000478746 KCTD21Q4G0X4 260 aa12.66□□□□□ -0.38
VIM-204ENST00000478746 RARRES2Q99969 163 aa12.66□□□□□ -0.38
VIM-204ENST00000478746 MND1Q9BWT6 205 aa12.66□□□□□ -0.38
VIM-204ENST00000478746 IGHV3-35A0A0C4DH35 117 aa12.65□□□□□ -0.38
VIM-204ENST00000478746 MRPS14O60783 128 aaKnown RBP12.65□□□□□ -0.38
VIM-204ENST00000478746 ZNF735P0CB33 412 aa12.65□□□□□ -0.38
VIM-204ENST00000478746 DEFA4P12838 97 aa12.65□□□□□ -0.38
VIM-204ENST00000478746 AREGP15514 252 aa12.65□□□□□ -0.38
VIM-204ENST00000478746 ODF3L2Q3SX64 289 aa12.65□□□□□ -0.38
VIM-204ENST00000478746 LAMTOR1Q6IAA8 161 aa12.65□□□□□ -0.38
VIM-204ENST00000478746 VKORC1L1Q8N0U8 176 aa12.65□□□□□ -0.38
VIM-204ENST00000478746 OR5B3Q8NH48 314 aa12.65□□□□□ -0.38
VIM-204ENST00000478746 CXorf58Q96LI9 332 aa12.65□□□□□ -0.38
VIM-204ENST00000478746 GFI1Q99684 422 aa12.65□□□□□ -0.38
VIM-204ENST00000478746 PRELID3BQ9Y3B1 194 aa12.65□□□□□ -0.38
VIM-204ENST00000478746 PKHD1P08F94 4074 aa12.65□□□□□ -0.38
VIM-204ENST00000478746 FCGR3AP08637 254 aa12.64□□□□□ -0.39
VIM-204ENST00000478746 MAS1LP35410 378 aa12.64□□□□□ -0.39
VIM-204ENST00000478746 IRF3Q14653 427 aa12.64□□□□□ -0.39
VIM-204ENST00000478746 SPHARQ15513 63 aa12.64□□□□□ -0.39
VIM-204ENST00000478746 RAB11BQ15907 218 aa12.64□□□□□ -0.39
VIM-204ENST00000478746 KLK9Q2XQG4 91 aa12.64□□□□□ -0.39
VIM-204ENST00000478746 PLET1Q6UQ28 207 aa12.64□□□□□ -0.39
VIM-204ENST00000478746 VSTM2AQ8TAG5 236 aa12.64□□□□□ -0.39
VIM-204ENST00000478746 MAFIPQ8WZ33 124 aa12.64□□□□□ -0.39
VIM-204ENST00000478746 OR2A7Q96R45 310 aa12.64□□□□□ -0.39
VIM-204ENST00000478746 C6orf62Q9GZU0 229 aaPredicted RBP12.64□□□□□ -0.39
VIM-204ENST00000478746 CSTL1Q9H114 145 aa12.64□□□□□ -0.39
VIM-204ENST00000478746 KLK9Q9UKQ9 250 aa12.64□□□□□ -0.39
VIM-204ENST00000478746 AK6Q9Y3D8 172 aaKnown RBP12.64□□□□□ -0.39
VIM-204ENST00000478746 FAT2Q9NYQ8 4349 aa12.63□□□□□ -0.39
VIM-204ENST00000478746 A0A1B0GW64 132 aa12.63□□□□□ -0.39
VIM-204ENST00000478746 MFSD2BA6NFX1 497 aa12.63□□□□□ -0.39
VIM-204ENST00000478746 IGLL5B9A064 214 aa12.63□□□□□ -0.39
VIM-204ENST00000478746 J3QRK9 145 aa12.63□□□□□ -0.39
VIM-204ENST00000478746 XRCC3O43542 346 aa12.63□□□□□ -0.39
VIM-204ENST00000478746 KBTBD11O94819 623 aa12.63□□□□□ -0.39
VIM-204ENST00000478746 S1PR2O95136 353 aa12.63□□□□□ -0.39
VIM-204ENST00000478746 PSMD7P51665 324 aa12.63□□□□□ -0.39
VIM-204ENST00000478746 ARFRP1Q13795 201 aa12.63□□□□□ -0.39
VIM-204ENST00000478746 OR2B11Q5JQS5 317 aa12.63□□□□□ -0.39
VIM-204ENST00000478746 ZNF773Q6PK81 442 aa12.63□□□□□ -0.39
VIM-204ENST00000478746 TMEM167AQ8TBQ9 72 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms