RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, human

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPHP4-208	ENST00000478423	HSPB1	P04792	205 aa	Known RBP	11.99	□□□□□ -0.49
NPHP4-208	ENST00000478423	RND3	P61587	244 aa		11.99	□□□□□ -0.49
NPHP4-208	ENST00000478423	C16orf82	Q7Z2V1	217 aa		11.99	□□□□□ -0.49
NPHP4-208	ENST00000478423	C19orf67	A6NJJ6	358 aa		11.99	□□□□□ -0.49
NPHP4-208	ENST00000478423	REG1A	P05451	166 aa		11.99	□□□□□ -0.49
NPHP4-208	ENST00000478423	SRSF6	Q13247	344 aa	Known RBP	11.99	□□□□□ -0.49
NPHP4-208	ENST00000478423	OR4A5	Q8NH83	315 aa		11.99	□□□□□ -0.49
NPHP4-208	ENST00000478423	FUT9	Q9Y231	359 aa		11.99	□□□□□ -0.49
NPHP4-208	ENST00000478423	PLCE1	Q9P212	2302 aa		11.99	□□□□□ -0.49
NPHP4-208	ENST00000478423	CSN3	P07498	182 aa		11.98	□□□□□ -0.49
NPHP4-208	ENST00000478423	C5orf17	Q8NAS9	161 aa		11.98	□□□□□ -0.49
NPHP4-208	ENST00000478423	FAM122A	Q96E09	287 aa		11.98	□□□□□ -0.49
NPHP4-208	ENST00000478423	P2RX4	Q99571	388 aa		11.98	□□□□□ -0.49
NPHP4-208	ENST00000478423	ZNF430	Q9H8G1	570 aa	Predicted RBP	11.98	□□□□□ -0.49
NPHP4-208	ENST00000478423	RNF222	A6NCQ9	220 aa		11.98	□□□□□ -0.49
NPHP4-208	ENST00000478423		J3KRW8	73 aa		11.98	□□□□□ -0.49
NPHP4-208	ENST00000478423	ORM1	P02763	201 aa		11.98	□□□□□ -0.49
NPHP4-208	ENST00000478423	WDR82	Q6UXN9	313 aa		11.98	□□□□□ -0.49
NPHP4-208	ENST00000478423	TMEM208	Q9BTX3	173 aa		11.98	□□□□□ -0.49
NPHP4-208	ENST00000478423	TRBV6-7	A0A0A0MS04	114 aa		11.98	□□□□□ -0.49
NPHP4-208	ENST00000478423	TRAV24	A0A0B4J272	114 aa		11.98	□□□□□ -0.49
NPHP4-208	ENST00000478423	KBTBD11-OT1	A0A1B0GTJ5	212 aa		11.98	□□□□□ -0.49
NPHP4-208	ENST00000478423	ZNF735	P0CB33	412 aa		11.98	□□□□□ -0.49
NPHP4-208	ENST00000478423	FHL1	Q13642	323 aa		11.98	□□□□□ -0.49
NPHP4-208	ENST00000478423	DNM1P46	Q6ZS02	220 aa		11.98	□□□□□ -0.49
NPHP4-208	ENST00000478423	MRPL37	Q9BZE1	423 aa	Known RBP	11.98	□□□□□ -0.49
NPHP4-208	ENST00000478423		F5H697	171 aa		11.98	□□□□□ -0.49
NPHP4-208	ENST00000478423	MDK	P21741	143 aa	Predicted RBP	11.98	□□□□□ -0.49
NPHP4-208	ENST00000478423	OR1L6	Q8NGR2	347 aa		11.98	□□□□□ -0.49
NPHP4-208	ENST00000478423	LRRK1	Q38SD2	2015 aa		11.97	□□□□□ -0.49
NPHP4-208	ENST00000478423	TFF1	P04155	84 aa		11.97	□□□□□ -0.49
NPHP4-208	ENST00000478423	KIR2DL2	P43627	348 aa	Predicted RBP	11.97	□□□□□ -0.49
NPHP4-208	ENST00000478423	UNQ5815/PRO19632	Q6UWF5	114 aa		11.97	□□□□□ -0.49
NPHP4-208	ENST00000478423	RABAC1	Q9UI14	185 aa		11.97	□□□□□ -0.49
NPHP4-208	ENST00000478423	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	11.97	□□□□□ -0.49
NPHP4-208	ENST00000478423	IL18BP	O95998	194 aa		11.97	□□□□□ -0.49
NPHP4-208	ENST00000478423	IQCJ	Q1A5X6	159 aa		11.97	□□□□□ -0.49
NPHP4-208	ENST00000478423	NPIPB3	Q92617	1050 aa		11.97	□□□□□ -0.49
NPHP4-208	ENST00000478423	IGHV1-18	A0A0C4DH31	117 aa		11.97	□□□□□ -0.49
NPHP4-208	ENST00000478423	PF4V1	P10720	104 aa		11.97	□□□□□ -0.49
NPHP4-208	ENST00000478423	IER3	P46695	156 aa		11.97	□□□□□ -0.49
NPHP4-208	ENST00000478423	C11orf42	Q8N5U0	333 aa		11.97	□□□□□ -0.49
NPHP4-208	ENST00000478423	KLHDC1	Q8N7A1	406 aa		11.97	□□□□□ -0.49
NPHP4-208	ENST00000478423	MDS2	Q8NDY4	140 aa		11.97	□□□□□ -0.49
NPHP4-208	ENST00000478423	LHFPL5	Q8TAF8	219 aa		11.97	□□□□□ -0.49
NPHP4-208	ENST00000478423	RARRES2	Q99969	163 aa		11.97	□□□□□ -0.49
NPHP4-208	ENST00000478423	TMSB15B	A0A087X1C1	80 aa		11.96	□□□□□ -0.49
NPHP4-208	ENST00000478423	TRAV14DV4	A0A0A6YYC5	116 aa		11.96	□□□□□ -0.49
NPHP4-208	ENST00000478423	SNURFL	B1AK76	121 aa		11.96	□□□□□ -0.49
NPHP4-208	ENST00000478423	PTBP3	O95758	552 aa	Known RBP	11.96	□□□□□ -0.49
NPHP4-208	ENST00000478423	HIST1H1E	P10412	219 aa	Known RBP	11.96	□□□□□ -0.49
NPHP4-208	ENST00000478423	COX19	Q49B96	90 aa		11.96	□□□□□ -0.49
NPHP4-208	ENST00000478423	TXNDC17	Q9BRA2	123 aa		11.96	□□□□□ -0.49
NPHP4-208	ENST00000478423	CHODL	Q9H9P2	273 aa		11.96	□□□□□ -0.49
NPHP4-208	ENST00000478423	B3GALT5-AS1	P59052	145 aa		11.96	□□□□□ -0.49
NPHP4-208	ENST00000478423	LY6G6F	Q5SQ64	297 aa		11.96	□□□□□ -0.49
NPHP4-208	ENST00000478423	RBM14	Q96PK6	669 aa	Known RBP	11.96	□□□□□ -0.49
NPHP4-208	ENST00000478423	DNAJC4	Q9NNZ3	241 aa		11.96	□□□□□ -0.49
NPHP4-208	ENST00000478423	OR2D3	Q8NGH3	330 aa		11.96	□□□□□ -0.5
NPHP4-208	ENST00000478423	VAMP8	Q9BV40	100 aa		11.96	□□□□□ -0.5
NPHP4-208	ENST00000478423	PNRC2	Q9NPJ4	139 aa	Known RBP	11.96	□□□□□ -0.5
NPHP4-208	ENST00000478423	WDR87	Q6ZQQ6	2873 aa		11.96	□□□□□ -0.5
NPHP4-208	ENST00000478423	GBF1	Q92538	1859 aa		11.96	□□□□□ -0.5
NPHP4-208	ENST00000478423	CCL3L1	P16619	93 aa		11.96	□□□□□ -0.5
NPHP4-208	ENST00000478423	WDR31	Q8NA23	367 aa		11.96	□□□□□ -0.5
NPHP4-208	ENST00000478423	GTF3A	Q92664	365 aa	Known RBP	11.96	□□□□□ -0.5
NPHP4-208	ENST00000478423	LY6G6E	A0A0G2JKS1	128 aa		11.95	□□□□□ -0.5
NPHP4-208	ENST00000478423	TM4SF5	O14894	197 aa		11.95	□□□□□ -0.5
NPHP4-208	ENST00000478423	HIST1H1B	P16401	226 aa	Known RBP	11.95	□□□□□ -0.5
NPHP4-208	ENST00000478423	SLC35B1	P78383	322 aa		11.95	□□□□□ -0.5
NPHP4-208	ENST00000478423	ZNF146	Q15072	292 aa		11.95	□□□□□ -0.5
NPHP4-208	ENST00000478423	SLC16A13	Q7RTY0	426 aa		11.95	□□□□□ -0.5
NPHP4-208	ENST00000478423	RNF144B	Q7Z419	303 aa		11.95	□□□□□ -0.5
NPHP4-208	ENST00000478423	UFC1	Q9Y3C8	167 aa		11.95	□□□□□ -0.5
NPHP4-208	ENST00000478423		U3KQA8	63 aa		11.95	□□□□□ -0.5
NPHP4-208	ENST00000478423	PGP	A6NDG6	321 aa		11.95	□□□□□ -0.5
NPHP4-208	ENST00000478423	MFAP2	P55001	183 aa		11.95	□□□□□ -0.5
NPHP4-208	ENST00000478423	ZNF273	Q14593	569 aa		11.95	□□□□□ -0.5
NPHP4-208	ENST00000478423	FAM90A1	Q86YD7	464 aa		11.95	□□□□□ -0.5
NPHP4-208	ENST00000478423	OSR1	Q8TAX0	266 aa	Predicted RBP	11.95	□□□□□ -0.5
NPHP4-208	ENST00000478423	IGKV1-27	A0A075B6S5	117 aa		11.95	□□□□□ -0.5
NPHP4-208	ENST00000478423	C8orf88	P0DMB2	117 aa		11.95	□□□□□ -0.5
NPHP4-208	ENST00000478423	LOXL3	P58215	753 aa		11.95	□□□□□ -0.5
NPHP4-208	ENST00000478423	FAM166A	Q6J272	317 aa		11.95	□□□□□ -0.5
NPHP4-208	ENST00000478423	SNRNP40	Q96DI7	357 aa	Known RBP	11.95	□□□□□ -0.5
NPHP4-208	ENST00000478423	EAF1	Q96JC9	268 aa	Predicted RBP	11.95	□□□□□ -0.5
NPHP4-208	ENST00000478423	TANC1	Q9C0D5	1861 aa		11.95	□□□□□ -0.5
NPHP4-208	ENST00000478423	SH2D7	A6NKC9	451 aa	Predicted RBP	11.94	□□□□□ -0.5
NPHP4-208	ENST00000478423	CA2	P00918	260 aa		11.94	□□□□□ -0.5
NPHP4-208	ENST00000478423	COMP	P49747	757 aa	Predicted RBP	11.94	□□□□□ -0.5
NPHP4-208	ENST00000478423	PPOX	P50336	477 aa		11.94	□□□□□ -0.5
NPHP4-208	ENST00000478423	BPIFA4P	Q86YQ2	179 aa		11.94	□□□□□ -0.5
NPHP4-208	ENST00000478423	WFDC3	Q8IUB2	231 aa		11.94	□□□□□ -0.5
NPHP4-208	ENST00000478423	LDLRAD4	O15165	306 aa		11.94	□□□□□ -0.5
NPHP4-208	ENST00000478423	ARL14EPL	P0DKL9	152 aa		11.94	□□□□□ -0.5
NPHP4-208	ENST00000478423	PEAR1	Q5VY43	1037 aa	Predicted RBP	11.94	□□□□□ -0.5
NPHP4-208	ENST00000478423	RNASE6	Q93091	150 aa	Known RBP	11.94	□□□□□ -0.5
NPHP4-208	ENST00000478423	RCC1L	Q96I51	464 aa	Known RBP	11.94	□□□□□ -0.5
NPHP4-208	ENST00000478423	NABP2	Q9BQ15	211 aa		11.94	□□□□□ -0.5
NPHP4-208	ENST00000478423	PLSCR4	Q9NRQ2	329 aa		11.94	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms