RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 MMD2Q8IY49 270 aa5.64□□□□□ -1.51
USP54-211ENST00000474929 PRSS35Q8N3Z0 413 aa5.64□□□□□ -1.51
USP54-211ENST00000474929 OR10H4Q8NGA5 316 aa5.64□□□□□ -1.51
USP54-211ENST00000474929 OR8J1Q8NGP2 316 aa5.64□□□□□ -1.51
USP54-211ENST00000474929 OR10AC1Q8NH08 325 aa5.64□□□□□ -1.51
USP54-211ENST00000474929 FYTTD1Q96QD9 318 aaKnown RBP5.64□□□□□ -1.51
USP54-211ENST00000474929 ATP6V0BQ99437 205 aa5.64□□□□□ -1.51
USP54-211ENST00000474929 C9orf16Q9BUW7 83 aa5.64□□□□□ -1.51
USP54-211ENST00000474929 WARS2Q9UGM6 360 aaKnown RBP5.64□□□□□ -1.51
USP54-211ENST00000474929 MUC2Q02817 5179 aa5.64□□□□□ -1.51
USP54-211ENST00000474929 LRP1Q07954 4544 aaKnown RBP5.64□□□□□ -1.51
USP54-211ENST00000474929 A0A1W2PQL4 384 aaPredicted RBP5.63□□□□□ -1.51
USP54-211ENST00000474929 RS1O15537 224 aa5.63□□□□□ -1.51
USP54-211ENST00000474929 EIF4EP06730 217 aaKnown RBP5.63□□□□□ -1.51
USP54-211ENST00000474929 OR2T7P0C7T2 308 aa5.63□□□□□ -1.51
USP54-211ENST00000474929 SERPINA2P20848 420 aa5.63□□□□□ -1.51
USP54-211ENST00000474929 C4BPBP20851 252 aa5.63□□□□□ -1.51
USP54-211ENST00000474929 ASIPP42127 132 aa5.63□□□□□ -1.51
USP54-211ENST00000474929 DEFB131AP59861 70 aa5.63□□□□□ -1.51
USP54-211ENST00000474929 HMGN3Q15651 99 aa5.63□□□□□ -1.51
USP54-211ENST00000474929 KLK9Q2XQG4 91 aa5.63□□□□□ -1.51
USP54-211ENST00000474929 LPCAT4Q643R3 524 aa5.63□□□□□ -1.51
USP54-211ENST00000474929 RAB12Q6IQ22 244 aa5.63□□□□□ -1.51
USP54-211ENST00000474929 MOB1BQ7L9L4 216 aa5.63□□□□□ -1.51
USP54-211ENST00000474929 SSX6Q7RTT6 188 aa5.63□□□□□ -1.51
USP54-211ENST00000474929 GID4Q8IVV7 300 aa5.63□□□□□ -1.51
USP54-211ENST00000474929 ZNF383Q8NA42 475 aa5.63□□□□□ -1.51
USP54-211ENST00000474929 TRUB1Q8WWH5 349 aaKnown RBP5.63□□□□□ -1.51
USP54-211ENST00000474929 IL1F10Q8WWZ1 152 aa5.63□□□□□ -1.51
USP54-211ENST00000474929 RFKQ969G6 155 aa5.63□□□□□ -1.51
USP54-211ENST00000474929 BSCL2Q96G97 398 aaPredicted RBP5.63□□□□□ -1.51
USP54-211ENST00000474929 MYCBPQ99417 103 aaPredicted RBP5.63□□□□□ -1.51
USP54-211ENST00000474929 AMBNQ9NP70 447 aa5.63□□□□□ -1.51
USP54-211ENST00000474929 KLK9Q9UKQ9 250 aa5.63□□□□□ -1.51
USP54-211ENST00000474929 RFNGQ9Y644 331 aa5.63□□□□□ -1.51
USP54-211ENST00000474929 PKHD1L1Q86WI1 4243 aa5.63□□□□□ -1.51
USP54-211ENST00000474929 LOC100130705A0A1B0GUX0 176 aa5.62□□□□□ -1.51
USP54-211ENST00000474929 DNASE2O00115 360 aaPredicted RBP5.62□□□□□ -1.51
USP54-211ENST00000474929 ATP6V1G2O95670 118 aa5.62□□□□□ -1.51
USP54-211ENST00000474929 GIG44P09565 113 aaPredicted RBP5.62□□□□□ -1.51
USP54-211ENST00000474929 DEFA4P12838 97 aa5.62□□□□□ -1.51
USP54-211ENST00000474929 CCR9P51686 369 aa5.62□□□□□ -1.51
USP54-211ENST00000474929 SNRPGP62308 76 aaKnown RBP5.62□□□□□ -1.51
USP54-211ENST00000474929 DLK1P80370 383 aa5.62□□□□□ -1.51
USP54-211ENST00000474929 RCN1Q15293 331 aa5.62□□□□□ -1.51
USP54-211ENST00000474929 TP53I3Q53FA7 332 aa5.62□□□□□ -1.51
USP54-211ENST00000474929 LEMD1Q68G75 181 aa5.62□□□□□ -1.51
USP54-211ENST00000474929 NFE4Q86UQ8 179 aa5.62□□□□□ -1.51
USP54-211ENST00000474929 LINC00528Q8N1L1 170 aa5.62□□□□□ -1.51
USP54-211ENST00000474929 PARP16Q8N5Y8 322 aa5.62□□□□□ -1.51
USP54-211ENST00000474929 DRAXINQ8NBI3 349 aaPredicted RBP5.62□□□□□ -1.51
USP54-211ENST00000474929 CSNK1G2-AS1Q8NCQ2 148 aa5.62□□□□□ -1.51
USP54-211ENST00000474929 OR2G2Q8NGZ5 317 aa5.62□□□□□ -1.51
USP54-211ENST00000474929 OSR1Q8TAX0 266 aaPredicted RBP5.62□□□□□ -1.51
USP54-211ENST00000474929 ABHD14BQ96IU4 210 aa5.62□□□□□ -1.51
USP54-211ENST00000474929 RNF2Q99496 336 aa5.62□□□□□ -1.51
USP54-211ENST00000474929 AGMATQ9BSE5 352 aa5.62□□□□□ -1.51
USP54-211ENST00000474929 UPK3BQ9BT76 320 aa5.62□□□□□ -1.51
USP54-211ENST00000474929 C20orf24Q9BUV8 137 aa5.62□□□□□ -1.51
USP54-211ENST00000474929 DKK2Q9UBU2 259 aa5.62□□□□□ -1.51
USP54-211ENST00000474929 GNG8Q9UK08 70 aa5.62□□□□□ -1.51
USP54-211ENST00000474929 LINC00588Q9Y4M8 146 aa5.62□□□□□ -1.51
USP54-211ENST00000474929 PEX16Q9Y5Y5 336 aa5.62□□□□□ -1.51
USP54-211ENST00000474929 RPS10-NUDT3A0A1W2PQS6 291 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 DAPL1A0PJW8 107 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 J3QLW9 94 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 M0R1X1 148 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 NUDT3O95989 172 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 C1QBP02746 253 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 CRYGCP07315 174 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 P0C879 139 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 ZNF19P17023 458 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 ZBTB25P24278 435 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 LINC00315P59091 139 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 DAD1P61803 113 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 ZNF85Q03923 595 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 PLA2G7Q13093 441 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 CDK10Q15131 360 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 FAM222AQ5U5X8 452 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 MEDAGQ5VYS4 303 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 FDX2Q6P4F2 183 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 SSX9Q7RTT3 188 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 SSX7Q7RTT5 188 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 LHFPL3Q86UP9 236 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 ZNF555Q8NEP9 628 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 RHOXF1Q8NHV9 184 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 ZNF502Q8TBZ5 544 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 CYGBQ8WWM9 190 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 LGALS12Q96DT0 336 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 RHPN1-AS1Q9BWJ2 59 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 ZNF581Q9P0T4 197 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 SMPXQ9UHP9 88 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 HSF4Q9ULV5 492 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 MGAT4AQ9UM21 535 aa5.61□□□□□ -1.51
USP54-211ENST00000474929 IGHV3-35A0A0C4DH35 117 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 IGHV7-4-1A0A0J9YVY3 117 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 MFSD2BA6NFX1 497 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 SNTNA6NMZ2 147 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 CHEK1O14757 476 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 SLC16A6O15403 523 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms