RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 KPRPQ5T749 579 aaPredicted RBP11.05□□□□□ -0.64
VAMP4-203ENST00000474047 FOXB2Q5VYV0 432 aa11.05□□□□□ -0.64
VAMP4-203ENST00000474047 DMBX1Q8NFW5 382 aa11.05□□□□□ -0.64
VAMP4-203ENST00000474047 MTFP1Q9UDX5 166 aa11.05□□□□□ -0.64
VAMP4-203ENST00000474047 A0A0G2JLM5 398 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 DPPA5A6NC42 116 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 H3BUA1 57 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 I3L521 148 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 PGLYRP1O75594 196 aaPredicted RBP11.04□□□□□ -0.64
VAMP4-203ENST00000474047 PRB2P02812 416 aaPredicted RBP11.04□□□□□ -0.64
VAMP4-203ENST00000474047 NQO2P16083 231 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 MAS1LP35410 378 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 BRWD1-AS2P59051 145 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 ERVK-16P61578 105 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 SSBP2P81877 361 aaPredicted RBP11.04□□□□□ -0.64
VAMP4-203ENST00000474047 MRPS10P82664 201 aaKnown RBP11.04□□□□□ -0.64
VAMP4-203ENST00000474047 RUNX1Q01196 453 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 PHLDA2Q53GA4 152 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 REC114Q7Z4M0 266 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 MCFD2Q8NI22 146 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 TMEM167AQ8TBQ9 72 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 FXYD6Q9H0Q3 95 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 RABL2AQ9UBK7 228 aaPredicted RBP11.04□□□□□ -0.64
VAMP4-203ENST00000474047 RABL2BQ9UNT1 228 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 GABARAPH6UMI1 98 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 LGALS1P09382 135 aaKnown RBP11.04□□□□□ -0.64
VAMP4-203ENST00000474047 OR9G9P0C7N8 305 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 PGAM2P15259 253 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 TAS2R31P59538 309 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 TAS2R19P59542 299 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 MRGPRG-AS1Q2M3A8 158 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 VAX1Q5SQQ9 334 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 OR4A5Q8NH83 315 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 FYTTD1Q96QD9 318 aaKnown RBP11.04□□□□□ -0.64
VAMP4-203ENST00000474047 ALX4Q9H161 411 aaPredicted RBP11.04□□□□□ -0.64
VAMP4-203ENST00000474047 CEPT1Q9Y6K0 416 aa11.04□□□□□ -0.64
VAMP4-203ENST00000474047 MEGF8Q7Z7M0 2845 aa11.03□□□□□ -0.64
VAMP4-203ENST00000474047 CD3DP04234 171 aa11.03□□□□□ -0.64
VAMP4-203ENST00000474047 TBPP20226 339 aa11.03□□□□□ -0.64
VAMP4-203ENST00000474047 F2RP25116 425 aa11.03□□□□□ -0.64
VAMP4-203ENST00000474047 RPL27AP46776 148 aaKnown RBP11.03□□□□□ -0.64
VAMP4-203ENST00000474047 RPL8P62917 257 aaKnown RBP11.03□□□□□ -0.64
VAMP4-203ENST00000474047 DGCR2P98153 550 aa11.03□□□□□ -0.64
VAMP4-203ENST00000474047 OR4A47Q6IF82 309 aa11.03□□□□□ -0.64
VAMP4-203ENST00000474047 SLC25A42Q86VD7 318 aa11.03□□□□□ -0.64
VAMP4-203ENST00000474047 SLC38A6Q8IZM9 456 aa11.03□□□□□ -0.64
VAMP4-203ENST00000474047 PUSL1Q8N0Z8 303 aaKnown RBP11.03□□□□□ -0.64
VAMP4-203ENST00000474047 DGCR14Q96DF8 476 aaKnown RBP11.03□□□□□ -0.64
VAMP4-203ENST00000474047 TINAGL1Q9GZM7 467 aaPredicted RBP11.03□□□□□ -0.64
VAMP4-203ENST00000474047 PLEKHA2Q9HB19 425 aa11.03□□□□□ -0.64
VAMP4-203ENST00000474047 LINC01619G3V211 115 aa11.02□□□□□ -0.65
VAMP4-203ENST00000474047 S1PR2O95136 353 aa11.02□□□□□ -0.65
VAMP4-203ENST00000474047 RPA2P15927 270 aa11.02□□□□□ -0.65
VAMP4-203ENST00000474047 HOXD3P31249 432 aaPredicted RBP11.02□□□□□ -0.65
VAMP4-203ENST00000474047 LPAR6P43657 344 aa11.02□□□□□ -0.65
VAMP4-203ENST00000474047 SSBP1Q04837 148 aaKnown RBP11.02□□□□□ -0.65
VAMP4-203ENST00000474047 C10orf55Q5SWW7 151 aa11.02□□□□□ -0.65
VAMP4-203ENST00000474047 ASPHD1Q5U4P2 390 aa11.02□□□□□ -0.65
VAMP4-203ENST00000474047 TMEM229BQ8NBD8 167 aa11.02□□□□□ -0.65
VAMP4-203ENST00000474047 RSRP1Q9BUV0 290 aa11.02□□□□□ -0.65
VAMP4-203ENST00000474047 BET1LQ9NYM9 111 aa11.02□□□□□ -0.65
VAMP4-203ENST00000474047 COMMD9Q9P000 198 aa11.02□□□□□ -0.65
VAMP4-203ENST00000474047 ZMAT5Q9UDW3 170 aaKnown RBP11.02□□□□□ -0.65
VAMP4-203ENST00000474047 TNCP24821 2201 aa11.02□□□□□ -0.65
VAMP4-203ENST00000474047 SEC14L6B5MCN3 397 aa11.01□□□□□ -0.65
VAMP4-203ENST00000474047 RAB3DO95716 219 aa11.01□□□□□ -0.65
VAMP4-203ENST00000474047 HSPB1P04792 205 aaKnown RBP11.01□□□□□ -0.65
VAMP4-203ENST00000474047 HLA-GP17693 338 aa11.01□□□□□ -0.65
VAMP4-203ENST00000474047 UCP3P55916 312 aa11.01□□□□□ -0.65
VAMP4-203ENST00000474047 FHL3Q13643 280 aa11.01□□□□□ -0.65
VAMP4-203ENST00000474047 SCGB2B2Q4G0G5 96 aa11.01□□□□□ -0.65
VAMP4-203ENST00000474047 C9orf66Q5T8R8 295 aa11.01□□□□□ -0.65
VAMP4-203ENST00000474047 ARRDC1Q8N5I2 433 aa11.01□□□□□ -0.65
VAMP4-203ENST00000474047 COMMD5Q9GZQ3 224 aa11.01□□□□□ -0.65
VAMP4-203ENST00000474047 SLIRPQ9GZT3 109 aaKnown RBP11.01□□□□□ -0.65
VAMP4-203ENST00000474047 RSL24D1Q9UHA3 163 aaKnown RBP11.01□□□□□ -0.65
VAMP4-203ENST00000474047 CMYA5Q8N3K9 4069 aa11.01□□□□□ -0.65
VAMP4-203ENST00000474047 ANKRD34BA5PLL1 514 aa11.01□□□□□ -0.65
VAMP4-203ENST00000474047 FABP12A6NFH5 140 aa11.01□□□□□ -0.65
VAMP4-203ENST00000474047 HMX3A6NHT5 357 aa11.01□□□□□ -0.65
VAMP4-203ENST00000474047 STEAP1BQ6NZ63 245 aa11.01□□□□□ -0.65
VAMP4-203ENST00000474047 TBC1D26Q86UD7 250 aa11.01□□□□□ -0.65
VAMP4-203ENST00000474047 ADAD2Q8NCV1 583 aaKnown RBP11.01□□□□□ -0.65
VAMP4-203ENST00000474047 SMIM4Q8WVI0 70 aa11.01□□□□□ -0.65
VAMP4-203ENST00000474047 USMG5Q96IX5 58 aa11.01□□□□□ -0.65
VAMP4-203ENST00000474047 TMEM140Q9NV12 185 aa11.01□□□□□ -0.65
VAMP4-203ENST00000474047 IGHV4OR15-8A0A075B7B6 117 aa11□□□□□ -0.65
VAMP4-203ENST00000474047 A0A087WW49 117 aa11□□□□□ -0.65
VAMP4-203ENST00000474047 OVOL1O14753 267 aa11□□□□□ -0.65
VAMP4-203ENST00000474047 SNAPC5O75971 98 aa11□□□□□ -0.65
VAMP4-203ENST00000474047 KRASP01116 189 aa11□□□□□ -0.65
VAMP4-203ENST00000474047 TNFSF8P32971 234 aa11□□□□□ -0.65
VAMP4-203ENST00000474047 S100A5P33763 92 aa11□□□□□ -0.65
VAMP4-203ENST00000474047 PPP5CP53041 499 aa11□□□□□ -0.65
VAMP4-203ENST00000474047 SLURP1P55000 103 aa11□□□□□ -0.65
VAMP4-203ENST00000474047 TTC9CQ8N5M4 171 aa11□□□□□ -0.65
VAMP4-203ENST00000474047 ZFAND1Q8TCF1 268 aa11□□□□□ -0.65
VAMP4-203ENST00000474047 MRAPQ8TCY5 172 aa11□□□□□ -0.65
VAMP4-203ENST00000474047 DCUN1D4Q92564 292 aa11□□□□□ -0.65
VAMP4-203ENST00000474047 RANGRFQ9HD47 186 aaPredicted RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms