RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 OR2A7Q96R45 310 aa14.26□□□□□ -0.13
CCDC88B-206ENST00000473405 CITED4Q96RK1 184 aa14.26□□□□□ -0.13
CCDC88B-206ENST00000473405 TRAV18A0A075B6X5 111 aa14.25□□□□□ -0.13
CCDC88B-206ENST00000473405 LOC100506127A0A0U1RQW1 187 aa14.25□□□□□ -0.13
CCDC88B-206ENST00000473405 OR2J3O76001 311 aa14.25□□□□□ -0.13
CCDC88B-206ENST00000473405 TATDN3Q17R31 274 aa14.25□□□□□ -0.13
CCDC88B-206ENST00000473405 IDNKQ5T6J7 187 aa14.25□□□□□ -0.13
CCDC88B-206ENST00000473405 ZNF66Q6ZN08 573 aa14.25□□□□□ -0.13
CCDC88B-206ENST00000473405 Q8N402 240 aa14.25□□□□□ -0.13
CCDC88B-206ENST00000473405 VSTM2AQ8TAG5 236 aa14.25□□□□□ -0.13
CCDC88B-206ENST00000473405 ZNF257Q9Y2Q1 563 aa14.25□□□□□ -0.13
CCDC88B-206ENST00000473405 NPIPB5A8MRT5 1133 aa14.24□□□□□ -0.13
CCDC88B-206ENST00000473405 FCGR2CP31995 323 aa14.24□□□□□ -0.13
CCDC88B-206ENST00000473405 ARPC4P59998 168 aa14.24□□□□□ -0.13
CCDC88B-206ENST00000473405 SLC25A42Q86VD7 318 aa14.24□□□□□ -0.13
CCDC88B-206ENST00000473405 HOGA1Q86XE5 327 aa14.24□□□□□ -0.13
CCDC88B-206ENST00000473405 OR13F1Q8NGS4 319 aa14.24□□□□□ -0.13
CCDC88B-206ENST00000473405 SECTM1Q8WVN6 248 aa14.24□□□□□ -0.13
CCDC88B-206ENST00000473405 EDA2RQ9HAV5 297 aa14.24□□□□□ -0.13
CCDC88B-206ENST00000473405 PEMTQ9UBM1 199 aa14.24□□□□□ -0.13
CCDC88B-206ENST00000473405 A0A0A6YYH2 397 aa14.23□□□□□ -0.13
CCDC88B-206ENST00000473405 A6NJ64 397 aa14.23□□□□□ -0.13
CCDC88B-206ENST00000473405 PPP5D1E7EU14 171 aa14.23□□□□□ -0.13
CCDC88B-206ENST00000473405 TNFSF12O43508 249 aa14.23□□□□□ -0.13
CCDC88B-206ENST00000473405 AIREO43918 545 aa14.23□□□□□ -0.13
CCDC88B-206ENST00000473405 ZNF735P0CB33 412 aa14.23□□□□□ -0.13
CCDC88B-206ENST00000473405 AREGP15514 252 aa14.23□□□□□ -0.13
CCDC88B-206ENST00000473405 RPL27AP46776 148 aaKnown RBP14.23□□□□□ -0.13
CCDC88B-206ENST00000473405 MSMO1Q15800 293 aa14.23□□□□□ -0.13
CCDC88B-206ENST00000473405 NEDD8Q15843 81 aa14.23□□□□□ -0.13
CCDC88B-206ENST00000473405 GTSCR1Q86UQ5 136 aa14.23□□□□□ -0.13
CCDC88B-206ENST00000473405 FANCD2OSQ96PS1 177 aa14.23□□□□□ -0.13
CCDC88B-206ENST00000473405 AUNIPQ9H7T9 357 aa14.23□□□□□ -0.13
CCDC88B-206ENST00000473405 CCL28Q9NRJ3 127 aa14.23□□□□□ -0.13
CCDC88B-206ENST00000473405 SLC2A9Q9NRM0 540 aa14.23□□□□□ -0.13
CCDC88B-206ENST00000473405 DNAH1Q9P2D7 4330 aa14.23□□□□□ -0.13
CCDC88B-206ENST00000473405 PPYP01298 95 aa14.22□□□□□ -0.13
CCDC88B-206ENST00000473405 HLA-AP01891 365 aaKnown RBP14.22□□□□□ -0.13
CCDC88B-206ENST00000473405 LYL1P12980 280 aa14.22□□□□□ -0.13
CCDC88B-206ENST00000473405 MYOD1P15172 320 aa14.22□□□□□ -0.13
CCDC88B-206ENST00000473405 EDN2P20800 178 aa14.22□□□□□ -0.13
CCDC88B-206ENST00000473405 MAS1LP35410 378 aa14.22□□□□□ -0.13
CCDC88B-206ENST00000473405 HAGHQ16775 308 aa14.22□□□□□ -0.13
CCDC88B-206ENST00000473405 SSX9Q7RTT3 188 aa14.22□□□□□ -0.13
CCDC88B-206ENST00000473405 OR2K2Q8NGT1 345 aa14.22□□□□□ -0.13
CCDC88B-206ENST00000473405 CCDC140Q96MF4 163 aa14.22□□□□□ -0.13
CCDC88B-206ENST00000473405 FYTTD1Q96QD9 318 aaKnown RBP14.22□□□□□ -0.13
CCDC88B-206ENST00000473405 CGB1A6NKQ9 187 aa14.21□□□□□ -0.13
CCDC88B-206ENST00000473405 HRASP01112 189 aa14.21□□□□□ -0.13
CCDC88B-206ENST00000473405 CRYGCP07315 174 aa14.21□□□□□ -0.13
CCDC88B-206ENST00000473405 KIR2DS2P43631 304 aa14.21□□□□□ -0.13
CCDC88B-206ENST00000473405 RPL8P62917 257 aaKnown RBP14.21□□□□□ -0.13
CCDC88B-206ENST00000473405 KLK9Q2XQG4 91 aa14.21□□□□□ -0.13
CCDC88B-206ENST00000473405 TIMM50Q3ZCQ8 353 aa14.21□□□□□ -0.13
CCDC88B-206ENST00000473405 CD300EQ496F6 205 aaPredicted RBP14.21□□□□□ -0.13
CCDC88B-206ENST00000473405 KCTD21Q4G0X4 260 aa14.21□□□□□ -0.13
CCDC88B-206ENST00000473405 OR4A47Q6IF82 309 aa14.21□□□□□ -0.13
CCDC88B-206ENST00000473405 KCTD12Q96CX2 325 aaKnown RBP14.21□□□□□ -0.13
CCDC88B-206ENST00000473405 FBXL7Q9UJT9 491 aa14.21□□□□□ -0.13
CCDC88B-206ENST00000473405 KLK9Q9UKQ9 250 aa14.21□□□□□ -0.13
CCDC88B-206ENST00000473405 RBFOX2O43251 390 aaKnown RBP eCLIP14.2□□□□□ -0.143e-7■■■■■ 64.4
CCDC88B-206ENST00000473405 NDUFB8O95169 186 aa14.2□□□□□ -0.14
CCDC88B-206ENST00000473405 IGHV3-23P01764 117 aa14.2□□□□□ -0.14
CCDC88B-206ENST00000473405 FCER2P06734 321 aa14.2□□□□□ -0.14
CCDC88B-206ENST00000473405 CTRB1P17538 263 aa14.2□□□□□ -0.14
CCDC88B-206ENST00000473405 PSMB6P28072 239 aa14.2□□□□□ -0.14
CCDC88B-206ENST00000473405 FAM209BQ5JX69 171 aa14.2□□□□□ -0.14
CCDC88B-206ENST00000473405 CTRB2Q6GPI1 263 aa14.2□□□□□ -0.14
CCDC88B-206ENST00000473405 SPAG16Q8N0X2 631 aa14.2□□□□□ -0.14
CCDC88B-206ENST00000473405 SPATA25Q9BR10 227 aa14.2□□□□□ -0.14
CCDC88B-206ENST00000473405 BET1LQ9NYM9 111 aa14.2□□□□□ -0.14
CCDC88B-206ENST00000473405 DPPA5A6NC42 116 aa14.19□□□□□ -0.14
CCDC88B-206ENST00000473405 C2orf70A6NJV1 201 aa14.19□□□□□ -0.14
CCDC88B-206ENST00000473405 ZNF785A8K8V0 405 aa14.19□□□□□ -0.14
CCDC88B-206ENST00000473405 SULT1C2O00338 296 aa14.19□□□□□ -0.14
CCDC88B-206ENST00000473405 REG1AP05451 166 aa14.19□□□□□ -0.14
CCDC88B-206ENST00000473405 HLA-GP17693 338 aa14.19□□□□□ -0.14
CCDC88B-206ENST00000473405 TGFBR1P36897 503 aa14.19□□□□□ -0.14
CCDC88B-206ENST00000473405 ZNF818PQ6ZRF7 136 aa14.19□□□□□ -0.14
CCDC88B-206ENST00000473405 LAX1Q8IWV1 398 aa14.19□□□□□ -0.14
CCDC88B-206ENST00000473405 SLC5A7Q9GZV3 580 aa14.19□□□□□ -0.14
CCDC88B-206ENST00000473405 PLEKHA3Q9HB20 300 aa14.19□□□□□ -0.14
CCDC88B-206ENST00000473405 ZC4H2Q9NQZ6 224 aa14.19□□□□□ -0.14
CCDC88B-206ENST00000473405 S4R3C0 116 aa14.19□□□□□ -0.14
CCDC88B-206ENST00000473405 MEIS3P1A6NDR6 274 aa14.18□□□□□ -0.14
CCDC88B-206ENST00000473405 LGALS9O00182 355 aa14.18□□□□□ -0.14
CCDC88B-206ENST00000473405 GGCTO75223 188 aaKnown RBP14.18□□□□□ -0.14
CCDC88B-206ENST00000473405 OR2C1O95371 312 aa14.18□□□□□ -0.14
CCDC88B-206ENST00000473405 FOLR2P14207 255 aa14.18□□□□□ -0.14
CCDC88B-206ENST00000473405 FXYD4P59646 89 aa14.18□□□□□ -0.14
CCDC88B-206ENST00000473405 OR2B8PP59922 312 aa14.18□□□□□ -0.14
CCDC88B-206ENST00000473405 CD81P60033 236 aa14.18□□□□□ -0.14
CCDC88B-206ENST00000473405 DEFB114Q30KQ6 69 aa14.18□□□□□ -0.14
CCDC88B-206ENST00000473405 LINC00322Q6ZN03 302 aaPredicted RBP14.18□□□□□ -0.14
CCDC88B-206ENST00000473405 ZBTB34Q8NCN2 500 aa14.18□□□□□ -0.14
CCDC88B-206ENST00000473405 OR5AP2Q8NGF4 316 aa14.18□□□□□ -0.14
CCDC88B-206ENST00000473405 OR4A5Q8NH83 315 aa14.18□□□□□ -0.14
CCDC88B-206ENST00000473405 ISOC1Q96CN7 298 aa14.18□□□□□ -0.14
CCDC88B-206ENST00000473405 TUBA4BQ9H853 241 aa14.18□□□□□ -0.14
CCDC88B-206ENST00000473405 DIABLOQ9NR28 239 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms