RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 GNRHRP30968 328 aa9.18□□□□□ -0.94
SYNE1-221ENST00000472563 RPL27AP46776 148 aaKnown RBP9.18□□□□□ -0.94
SYNE1-221ENST00000472563 RFX2P48378 723 aa9.18□□□□□ -0.94
SYNE1-221ENST00000472563 RORCP51449 518 aa9.18□□□□□ -0.94
SYNE1-221ENST00000472563 CTF1Q16619 201 aa9.18□□□□□ -0.94
SYNE1-221ENST00000472563 C10orf55Q5SWW7 151 aa9.18□□□□□ -0.94
SYNE1-221ENST00000472563 ZNF818PQ6ZRF7 136 aa9.18□□□□□ -0.94
SYNE1-221ENST00000472563 LYSMD2Q8IV50 215 aa9.18□□□□□ -0.94
SYNE1-221ENST00000472563 FAM223AQ8IWN6 122 aa9.18□□□□□ -0.94
SYNE1-221ENST00000472563 OR5H2Q8NGV7 314 aa9.18□□□□□ -0.94
SYNE1-221ENST00000472563 OR4A5Q8NH83 315 aa9.18□□□□□ -0.94
SYNE1-221ENST00000472563 CD300LFQ8TDQ1 290 aa9.18□□□□□ -0.94
SYNE1-221ENST00000472563 GPX8Q8TED1 209 aa9.18□□□□□ -0.94
SYNE1-221ENST00000472563 MOB3AQ96BX8 217 aa9.18□□□□□ -0.94
SYNE1-221ENST00000472563 OR4C12Q96R67 309 aa9.18□□□□□ -0.94
SYNE1-221ENST00000472563 ELOVL1Q9BW60 279 aa9.18□□□□□ -0.94
SYNE1-221ENST00000472563 BET1LQ9NYM9 111 aa9.18□□□□□ -0.94
SYNE1-221ENST00000472563 PEF1Q9UBV8 284 aaKnown RBP9.18□□□□□ -0.94
SYNE1-221ENST00000472563 HPRT1P00492 218 aa9.17□□□□□ -0.94
SYNE1-221ENST00000472563 PMP2P02689 132 aa9.17□□□□□ -0.94
SYNE1-221ENST00000472563 ZNF735P0CB33 412 aa9.17□□□□□ -0.94
SYNE1-221ENST00000472563 TAS2R31P59538 309 aa9.17□□□□□ -0.94
SYNE1-221ENST00000472563 RPL8P62917 257 aaKnown RBP9.17□□□□□ -0.94
SYNE1-221ENST00000472563 RHOGP84095 191 aa9.17□□□□□ -0.94
SYNE1-221ENST00000472563 ZNF45Q02386 682 aa9.17□□□□□ -0.94
SYNE1-221ENST00000472563 ATP5G2Q06055 141 aa9.17□□□□□ -0.94
SYNE1-221ENST00000472563 POU2AF1Q16633 256 aa9.17□□□□□ -0.94
SYNE1-221ENST00000472563 AADACL3Q5VUY0 350 aa9.17□□□□□ -0.94
SYNE1-221ENST00000472563 TMEM17Q86X19 198 aa9.17□□□□□ -0.94
SYNE1-221ENST00000472563 NECAP1Q8NC96 275 aa9.17□□□□□ -0.94
SYNE1-221ENST00000472563 OR6Q1Q8NGQ2 317 aa9.17□□□□□ -0.94
SYNE1-221ENST00000472563 OR6F1Q8NGZ6 308 aa9.17□□□□□ -0.94
SYNE1-221ENST00000472563 ZNF2Q9BSG1 426 aaPredicted RBP9.17□□□□□ -0.94
SYNE1-221ENST00000472563 NAA50Q9GZZ1 169 aaKnown RBP9.17□□□□□ -0.94
SYNE1-221ENST00000472563 AKIP1Q9NQ31 210 aa9.17□□□□□ -0.94
SYNE1-221ENST00000472563 SLC2A9Q9NRM0 540 aa9.17□□□□□ -0.94
SYNE1-221ENST00000472563 ZNF257Q9Y2Q1 563 aa9.17□□□□□ -0.94
SYNE1-221ENST00000472563 A0A1B0GW64 132 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 HMX3A6NHT5 357 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 NPIPB5A8MRT5 1133 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 E7EUB6 86 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 PGLYRP1O75594 196 aaPredicted RBP9.16□□□□□ -0.94
SYNE1-221ENST00000472563 LY86O95711 162 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 PRH1P02810 166 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 CRYGCP07315 174 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 FGF2P09038 288 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 NHLRC4P0CG21 123 aaPredicted RBP9.16□□□□□ -0.94
SYNE1-221ENST00000472563 NQO2P16083 231 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 SPNP16150 400 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 ZNF182P17025 639 aaPredicted RBP9.16□□□□□ -0.94
SYNE1-221ENST00000472563 HLA-GP17693 338 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 ELK1P19419 428 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 DEFA5Q01523 94 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 KLK9Q2XQG4 91 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 FAM209BQ5JX69 171 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 VAX1Q5SQQ9 334 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 OR4A47Q6IF82 309 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 MZT2AQ6P582 158 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 SSX9Q7RTT3 188 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 CMTM1Q8IZ96 169 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 OR51H1Q8NH63 302 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 AP3S1Q92572 193 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 FYTTD1Q96QD9 318 aaKnown RBP9.16□□□□□ -0.94
SYNE1-221ENST00000472563 PLEKHA2Q9HB19 425 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 KLK9Q9UKQ9 250 aa9.16□□□□□ -0.94
SYNE1-221ENST00000472563 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.15□□□□□ -0.94
SYNE1-221ENST00000472563 DPPA5A6NC42 116 aa9.15□□□□□ -0.94
SYNE1-221ENST00000472563 UPK2O00526 184 aa9.15□□□□□ -0.94
SYNE1-221ENST00000472563 HPGDSO60760 199 aa9.15□□□□□ -0.94
SYNE1-221ENST00000472563 TPPPO94811 219 aa9.15□□□□□ -0.94
SYNE1-221ENST00000472563 IGLV1-51P01701 117 aa9.15□□□□□ -0.94
SYNE1-221ENST00000472563 TRBV12-3P01733 135 aa9.15□□□□□ -0.94
SYNE1-221ENST00000472563 F2RP25116 425 aa9.15□□□□□ -0.94
SYNE1-221ENST00000472563 HLA-DMAP28067 261 aa9.15□□□□□ -0.94
SYNE1-221ENST00000472563 RCVRNP35243 200 aa9.15□□□□□ -0.94
SYNE1-221ENST00000472563 HRH1P35367 487 aa9.15□□□□□ -0.94
SYNE1-221ENST00000472563 ALDH3B2P48448 385 aa9.15□□□□□ -0.94
SYNE1-221ENST00000472563 SYNJ2BPP57105 145 aa9.15□□□□□ -0.94
SYNE1-221ENST00000472563 EXOSC2Q13868 293 aaKnown RBP9.15□□□□□ -0.94
SYNE1-221ENST00000472563 TATDN3Q17R31 274 aa9.15□□□□□ -0.94
SYNE1-221ENST00000472563 GPR107Q5VW38 600 aa9.15□□□□□ -0.94
SYNE1-221ENST00000472563 C11orf87Q6NUJ2 197 aa9.15□□□□□ -0.94
SYNE1-221ENST00000472563 IL34Q6ZMJ4 242 aa9.15□□□□□ -0.94
SYNE1-221ENST00000472563 SNX29P2Q8IUI4 249 aa9.15□□□□□ -0.94
SYNE1-221ENST00000472563 OR9G4Q8NGQ1 327 aa9.15□□□□□ -0.94
SYNE1-221ENST00000472563 MRPS26Q9BYN8 205 aaKnown RBP9.15□□□□□ -0.94
SYNE1-221ENST00000472563 HRASLSQ9HDD0 168 aa9.15□□□□□ -0.94
SYNE1-221ENST00000472563 COMMD9Q9P000 198 aa9.15□□□□□ -0.94
SYNE1-221ENST00000472563 SMAD5-AS1Q9Y6J3 95 aa9.15□□□□□ -0.94
SYNE1-221ENST00000472563 COL7A1Q02388 2944 aa9.14□□□□□ -0.95
SYNE1-221ENST00000472563 GPR31O00270 319 aa9.14□□□□□ -0.95
SYNE1-221ENST00000472563 OR2J3O76001 311 aa9.14□□□□□ -0.95
SYNE1-221ENST00000472563 S1PR2O95136 353 aa9.14□□□□□ -0.95
SYNE1-221ENST00000472563 DHFRP00374 187 aa9.14□□□□□ -0.95
SYNE1-221ENST00000472563 AREGP15514 252 aa9.14□□□□□ -0.95
SYNE1-221ENST00000472563 PSMB6P28072 239 aa9.14□□□□□ -0.95
SYNE1-221ENST00000472563 OR2B8PP59922 312 aa9.14□□□□□ -0.95
SYNE1-221ENST00000472563 TSPAN5P62079 268 aa9.14□□□□□ -0.95
SYNE1-221ENST00000472563 RPEL1Q2QD12 228 aa9.14□□□□□ -0.95
SYNE1-221ENST00000472563 C15orf32Q32M92 178 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms