RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 MUC7Q8TAX7 377 aa12□□□□□ -0.49
CCDC88B-205ENST00000472524 YIPF6Q96EC8 236 aa12□□□□□ -0.49
CCDC88B-205ENST00000472524 A0A087WXM4 84 aa11.99□□□□□ -0.49
CCDC88B-205ENST00000472524 TRBV9A0A0B4J1U6 114 aa11.99□□□□□ -0.49
CCDC88B-205ENST00000472524 DPPA5A6NC42 116 aa11.99□□□□□ -0.49
CCDC88B-205ENST00000472524 TEX22C9J3V5 150 aa11.99□□□□□ -0.49
CCDC88B-205ENST00000472524 XRCC3O43542 346 aa11.99□□□□□ -0.49
CCDC88B-205ENST00000472524 TMEM127O75204 238 aa11.99□□□□□ -0.49
CCDC88B-205ENST00000472524 OR2J3O76001 311 aa11.99□□□□□ -0.49
CCDC88B-205ENST00000472524 HRASP01112 189 aa11.99□□□□□ -0.49
CCDC88B-205ENST00000472524 RPS19P39019 145 aaKnown RBP11.99□□□□□ -0.49
CCDC88B-205ENST00000472524 TATDN3Q17R31 274 aa11.99□□□□□ -0.49
CCDC88B-205ENST00000472524 CASC10Q5T4H9 136 aa11.99□□□□□ -0.49
CCDC88B-205ENST00000472524 SLC25A42Q86VD7 318 aa11.99□□□□□ -0.49
CCDC88B-205ENST00000472524 TMEM17Q86X19 198 aa11.99□□□□□ -0.49
CCDC88B-205ENST00000472524 CROCCP3Q8IVE0 287 aa11.99□□□□□ -0.49
CCDC88B-205ENST00000472524 SPAG16Q8N0X2 631 aa11.99□□□□□ -0.49
CCDC88B-205ENST00000472524 TMEM167AQ8TBQ9 72 aa11.99□□□□□ -0.49
CCDC88B-205ENST00000472524 S100A16Q96FQ6 103 aaKnown RBP11.99□□□□□ -0.49
CCDC88B-205ENST00000472524 RYR2Q92736 4967 aa11.99□□□□□ -0.49
CCDC88B-205ENST00000472524 E7EUB6 86 aa11.98□□□□□ -0.49
CCDC88B-205ENST00000472524 BMPR1BO00238 502 aa11.98□□□□□ -0.49
CCDC88B-205ENST00000472524 SULT1C2O00338 296 aa11.98□□□□□ -0.49
CCDC88B-205ENST00000472524 TNFAIP8O95379 198 aa11.98□□□□□ -0.49
CCDC88B-205ENST00000472524 IL6RP08887 468 aaPredicted RBP11.98□□□□□ -0.49
CCDC88B-205ENST00000472524 MYOD1P15172 320 aa11.98□□□□□ -0.49
CCDC88B-205ENST00000472524 MSMO1Q15800 293 aa11.98□□□□□ -0.49
CCDC88B-205ENST00000472524 IL34Q6ZMJ4 242 aa11.98□□□□□ -0.49
CCDC88B-205ENST00000472524 SAMD12Q8N8I0 201 aa11.98□□□□□ -0.49
CCDC88B-205ENST00000472524 ZBTB34Q8NCN2 500 aa11.98□□□□□ -0.49
CCDC88B-205ENST00000472524 OR5AP2Q8NGF4 316 aa11.98□□□□□ -0.49
CCDC88B-205ENST00000472524 RCHY1Q96PM5 261 aa11.98□□□□□ -0.49
CCDC88B-205ENST00000472524 EHFQ9NZC4 300 aa11.98□□□□□ -0.49
CCDC88B-205ENST00000472524 ZNF257Q9Y2Q1 563 aa11.98□□□□□ -0.49
CCDC88B-205ENST00000472524 TENM2Q9NT68 2774 aa11.97□□□□□ -0.49
CCDC88B-205ENST00000472524 CSN3P07498 182 aa11.97□□□□□ -0.49
CCDC88B-205ENST00000472524 MAS1LP35410 378 aa11.97□□□□□ -0.49
CCDC88B-205ENST00000472524 TAS2R20P59543 309 aa11.97□□□□□ -0.49
CCDC88B-205ENST00000472524 HERV-K104P61576 105 aa11.97□□□□□ -0.49
CCDC88B-205ENST00000472524 RPL8P62917 257 aaKnown RBP11.97□□□□□ -0.49
CCDC88B-205ENST00000472524 CATR1Q13166 79 aa11.97□□□□□ -0.49
CCDC88B-205ENST00000472524 C15orf32Q32M92 178 aa11.97□□□□□ -0.49
CCDC88B-205ENST00000472524 TMEM69Q5SWH9 247 aa11.97□□□□□ -0.49
CCDC88B-205ENST00000472524 OR4A47Q6IF82 309 aa11.97□□□□□ -0.49
CCDC88B-205ENST00000472524 ZNF818PQ6ZRF7 136 aa11.97□□□□□ -0.49
CCDC88B-205ENST00000472524 NECAP1Q8NC96 275 aa11.97□□□□□ -0.49
CCDC88B-205ENST00000472524 OR51H1Q8NH63 302 aa11.97□□□□□ -0.49
CCDC88B-205ENST00000472524 HRASLSQ9HDD0 168 aa11.97□□□□□ -0.49
CCDC88B-205ENST00000472524 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.96□□□□□ -0.49
CCDC88B-205ENST00000472524 A0A1B0GW64 132 aa11.96□□□□□ -0.49
CCDC88B-205ENST00000472524 NPIPB5A8MRT5 1133 aa11.96□□□□□ -0.49
CCDC88B-205ENST00000472524 PPP5D1E7EU14 171 aa11.96□□□□□ -0.49
CCDC88B-205ENST00000472524 H0Y980 276 aa11.96□□□□□ -0.49
CCDC88B-205ENST00000472524 IGHV3-23P01764 117 aa11.96□□□□□ -0.49
CCDC88B-205ENST00000472524 REG1AP05451 166 aa11.96□□□□□ -0.49
CCDC88B-205ENST00000472524 ZNF735P0CB33 412 aa11.96□□□□□ -0.49
CCDC88B-205ENST00000472524 IGHV4-30-4P0DP06 118 aa11.96□□□□□ -0.49
CCDC88B-205ENST00000472524 AREGP15514 252 aa11.96□□□□□ -0.49
CCDC88B-205ENST00000472524 HLA-GP17693 338 aa11.96□□□□□ -0.49
CCDC88B-205ENST00000472524 AADACL3Q5VUY0 350 aa11.96□□□□□ -0.49
CCDC88B-205ENST00000472524 SGPP2Q8IWX5 399 aa11.96□□□□□ -0.49
CCDC88B-205ENST00000472524 Q8N1Y9 231 aa11.96□□□□□ -0.49
CCDC88B-205ENST00000472524 GIMAP1Q8WWP7 306 aa11.96□□□□□ -0.49
CCDC88B-205ENST00000472524 SLC2A9Q9NRM0 540 aa11.96□□□□□ -0.49
CCDC88B-205ENST00000472524 GAR1Q9NY12 217 aaKnown RBP11.96□□□□□ -0.49
CCDC88B-205ENST00000472524 BET1LQ9NYM9 111 aa11.96□□□□□ -0.49
CCDC88B-205ENST00000472524 PEMTQ9UBM1 199 aa11.96□□□□□ -0.49
CCDC88B-205ENST00000472524 FBXL7Q9UJT9 491 aa11.96□□□□□ -0.49
CCDC88B-205ENST00000472524 RBFOX2O43251 390 aaKnown RBP eCLIP11.95□□□□□ -0.57e-7■□□□□ 10.2
CCDC88B-205ENST00000472524 PMP2P02689 132 aa11.95□□□□□ -0.5
CCDC88B-205ENST00000472524 RFX2P48378 723 aa11.95□□□□□ -0.5
CCDC88B-205ENST00000472524 AIFM2Q9BRQ8 373 aa11.95□□□□□ -0.5
CCDC88B-205ENST00000472524 ZMAT4Q9H898 229 aa11.95□□□□□ -0.5
CCDC88B-205ENST00000472524 S4R3C0 116 aa11.95□□□□□ -0.5
CCDC88B-205ENST00000472524 TRAV3A0A0B4J244 114 aa11.94□□□□□ -0.5
CCDC88B-205ENST00000472524 IZUMO1RA6ND01 250 aa11.94□□□□□ -0.5
CCDC88B-205ENST00000472524 S1PR2O95136 353 aa11.94□□□□□ -0.5
CCDC88B-205ENST00000472524 NDUFB8O95169 186 aa11.94□□□□□ -0.5
CCDC88B-205ENST00000472524 HPRT1P00492 218 aa11.94□□□□□ -0.5
CCDC88B-205ENST00000472524 HLA-AP01891 365 aaKnown RBP11.94□□□□□ -0.5
CCDC88B-205ENST00000472524 RPA2P15927 270 aa11.94□□□□□ -0.5
CCDC88B-205ENST00000472524 NQO2P16083 231 aa11.94□□□□□ -0.5
CCDC88B-205ENST00000472524 PSMB6P28072 239 aa11.94□□□□□ -0.5
CCDC88B-205ENST00000472524 TAS2R31P59538 309 aa11.94□□□□□ -0.5
CCDC88B-205ENST00000472524 NCS1P62166 190 aa11.94□□□□□ -0.5
CCDC88B-205ENST00000472524 LCN12Q6JVE5 192 aa11.94□□□□□ -0.5
CCDC88B-205ENST00000472524 Q8N402 240 aa11.94□□□□□ -0.5
CCDC88B-205ENST00000472524 OR5H2Q8NGV7 314 aa11.94□□□□□ -0.5
CCDC88B-205ENST00000472524 OR4A5Q8NH83 315 aa11.94□□□□□ -0.5
CCDC88B-205ENST00000472524 SLC25A46Q96AG3 418 aa11.94□□□□□ -0.5
CCDC88B-205ENST00000472524 FANCD2OSQ96PS1 177 aa11.94□□□□□ -0.5
CCDC88B-205ENST00000472524 ZNF2Q9BSG1 426 aaPredicted RBP11.94□□□□□ -0.5
CCDC88B-205ENST00000472524 SIGLEC8Q9NYZ4 499 aa11.94□□□□□ -0.5
CCDC88B-205ENST00000472524 ANAPC10Q9UM13 185 aa11.94□□□□□ -0.5
CCDC88B-205ENST00000472524 SACSQ9NZJ4 4579 aa11.93□□□□□ -0.5
CCDC88B-205ENST00000472524 CGB1A6NKQ9 187 aa11.93□□□□□ -0.5
CCDC88B-205ENST00000472524 DHFRP00374 187 aa11.93□□□□□ -0.5
CCDC88B-205ENST00000472524 RLN1P04808 185 aa11.93□□□□□ -0.5
CCDC88B-205ENST00000472524 EIF4EP06730 217 aaKnown RBP11.93□□□□□ -0.5
CCDC88B-205ENST00000472524 CRYGCP07315 174 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms