RNA–Protein interactions for RNA: ENST00000472490.1

BRCA1-211, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-211ENST00000472490 FGF2P09038 288 aa11.12□□□□□ -0.63
BRCA1-211ENST00000472490 EGR2P11161 476 aaPredicted RBP11.12□□□□□ -0.63
BRCA1-211ENST00000472490 CDX1P47902 265 aaPredicted RBP11.12□□□□□ -0.63
BRCA1-211ENST00000472490 RND3P61587 244 aa11.12□□□□□ -0.63
BRCA1-211ENST00000472490 PJVKQ0ZLH3 352 aa11.12□□□□□ -0.63
BRCA1-211ENST00000472490 SURF2Q15527 256 aaPredicted RBP11.12□□□□□ -0.63
BRCA1-211ENST00000472490 POU2AF1Q16633 256 aa11.12□□□□□ -0.63
BRCA1-211ENST00000472490 HIST2H2BDQ6DRA6 164 aa11.12□□□□□ -0.63
BRCA1-211ENST00000472490 TBC1D26Q86UD7 250 aa11.12□□□□□ -0.63
BRCA1-211ENST00000472490 ZNF695Q8IW36 515 aa11.12□□□□□ -0.63
BRCA1-211ENST00000472490 VKORC1L1Q8N0U8 176 aa11.12□□□□□ -0.63
BRCA1-211ENST00000472490 PUSL1Q8N0Z8 303 aaKnown RBP11.12□□□□□ -0.63
BRCA1-211ENST00000472490 TOMM5Q8N4H5 51 aa11.12□□□□□ -0.63
BRCA1-211ENST00000472490 CCDC71LQ8N9Z2 235 aa11.12□□□□□ -0.63
BRCA1-211ENST00000472490 DMBX1Q8NFW5 382 aa11.12□□□□□ -0.63
BRCA1-211ENST00000472490 TMEM167AQ8TBQ9 72 aa11.12□□□□□ -0.63
BRCA1-211ENST00000472490 SCGB3A2Q96PL1 93 aa11.12□□□□□ -0.63
BRCA1-211ENST00000472490 SLA2Q9H6Q3 261 aa11.12□□□□□ -0.63
BRCA1-211ENST00000472490 ZNF430Q9H8G1 570 aaPredicted RBP11.12□□□□□ -0.63
BRCA1-211ENST00000472490 HRASLSQ9HDD0 168 aa11.12□□□□□ -0.63
BRCA1-211ENST00000472490 BET1LQ9NYM9 111 aa11.12□□□□□ -0.63
BRCA1-211ENST00000472490 COPZ2Q9P299 210 aa11.12□□□□□ -0.63
BRCA1-211ENST00000472490 FBXO7Q9Y3I1 522 aa11.12□□□□□ -0.63
BRCA1-211ENST00000472490 TENM1Q9UKZ4 2725 aa11.12□□□□□ -0.63
BRCA1-211ENST00000472490 MSGN1A6NI15 193 aa11.11□□□□□ -0.63
BRCA1-211ENST00000472490 H3BUA1 57 aa11.11□□□□□ -0.63
BRCA1-211ENST00000472490 MPPED1O15442 326 aa11.11□□□□□ -0.63
BRCA1-211ENST00000472490 B3GALNT1O75752 331 aa11.11□□□□□ -0.63
BRCA1-211ENST00000472490 SERPINE2P07093 398 aa11.11□□□□□ -0.63
BRCA1-211ENST00000472490 RAB9AP51151 201 aa11.11□□□□□ -0.63
BRCA1-211ENST00000472490 PPP5CP53041 499 aa11.11□□□□□ -0.63
BRCA1-211ENST00000472490 PIGPP57054 158 aa11.11□□□□□ -0.63
BRCA1-211ENST00000472490 RPL8P62917 257 aaKnown RBP11.11□□□□□ -0.63
BRCA1-211ENST00000472490 ZNF79Q15937 498 aa11.11□□□□□ -0.63
BRCA1-211ENST00000472490 C19orf54Q5BKX5 351 aa11.11□□□□□ -0.63
BRCA1-211ENST00000472490 FOXB2Q5VYV0 432 aa11.11□□□□□ -0.63
BRCA1-211ENST00000472490 SSX9Q7RTT3 188 aa11.11□□□□□ -0.63
BRCA1-211ENST00000472490 KLHL30-AS1Q8NEE0 82 aa11.11□□□□□ -0.63
BRCA1-211ENST00000472490 OR4C16Q8NGL9 310 aa11.11□□□□□ -0.63
BRCA1-211ENST00000472490 SRSF12Q8WXF0 261 aaKnown RBP11.11□□□□□ -0.63
BRCA1-211ENST00000472490 UBE2E2Q96LR5 201 aa11.11□□□□□ -0.63
BRCA1-211ENST00000472490 MCUBQ9NWR8 336 aa11.11□□□□□ -0.63
BRCA1-211ENST00000472490 SLC2A8Q9NY64 477 aa11.11□□□□□ -0.63
BRCA1-211ENST00000472490 C14orf166Q9Y224 244 aaKnown RBP11.11□□□□□ -0.63
BRCA1-211ENST00000472490 MARCH11A6NNE9 402 aa11.1□□□□□ -0.63
BRCA1-211ENST00000472490 ATG12O94817 140 aa11.1□□□□□ -0.63
BRCA1-211ENST00000472490 S1PR2O95136 353 aa11.1□□□□□ -0.63
BRCA1-211ENST00000472490 CTSDP07339 412 aaPredicted RBP11.1□□□□□ -0.63
BRCA1-211ENST00000472490 ZNF735P0CB33 412 aa11.1□□□□□ -0.63
BRCA1-211ENST00000472490 RPA2P15927 270 aa11.1□□□□□ -0.63
BRCA1-211ENST00000472490 LPAR6P43657 344 aa11.1□□□□□ -0.63
BRCA1-211ENST00000472490 INPP1P49441 399 aa11.1□□□□□ -0.63
BRCA1-211ENST00000472490 OR4A47Q6IF82 309 aa11.1□□□□□ -0.63
BRCA1-211ENST00000472490 FAAP20Q6NZ36 180 aa11.1□□□□□ -0.63
BRCA1-211ENST00000472490 SLC25A42Q86VD7 318 aa11.1□□□□□ -0.63
BRCA1-211ENST00000472490 CADM3Q8N126 398 aa11.1□□□□□ -0.63
BRCA1-211ENST00000472490 GDPD1Q8N9F7 314 aa11.1□□□□□ -0.63
BRCA1-211ENST00000472490 OR51S1Q8NGJ8 323 aa11.1□□□□□ -0.63
BRCA1-211ENST00000472490 OR13C8Q8NGS7 320 aa11.1□□□□□ -0.63
BRCA1-211ENST00000472490 C4orf3Q8WVX3 66 aa11.1□□□□□ -0.63
BRCA1-211ENST00000472490 ZNF355PQ9NSJ1 428 aa11.1□□□□□ -0.63
BRCA1-211ENST00000472490 VSIG4Q9Y279 399 aa11.1□□□□□ -0.63
BRCA1-211ENST00000472490 ANK2Q01484 3957 aa11.09□□□□□ -0.63
BRCA1-211ENST00000472490 KRASP01116 189 aa11.09□□□□□ -0.63
BRCA1-211ENST00000472490 HLA-GP17693 338 aa11.09□□□□□ -0.63
BRCA1-211ENST00000472490 SSBP2P81877 361 aaPredicted RBP11.09□□□□□ -0.63
BRCA1-211ENST00000472490 ZNF45Q02386 682 aa11.09□□□□□ -0.63
BRCA1-211ENST00000472490 MRGPRG-AS1Q2M3A8 158 aa11.09□□□□□ -0.63
BRCA1-211ENST00000472490 MARCH1Q8TCQ1 289 aa11.09□□□□□ -0.63
BRCA1-211ENST00000472490 MYOZ3Q8TDC0 251 aa11.09□□□□□ -0.63
BRCA1-211ENST00000472490 TRIM63Q969Q1 353 aa11.09□□□□□ -0.63
BRCA1-211ENST00000472490 TSC22D3Q99576 134 aa11.09□□□□□ -0.63
BRCA1-211ENST00000472490 COMMD5Q9GZQ3 224 aa11.09□□□□□ -0.63
BRCA1-211ENST00000472490 BATF3Q9NR55 127 aa11.09□□□□□ -0.63
BRCA1-211ENST00000472490 TMEM140Q9NV12 185 aa11.09□□□□□ -0.63
BRCA1-211ENST00000472490 TET2Q6N021 2002 aaPredicted RBP11.09□□□□□ -0.63
BRCA1-211ENST00000472490 A0A0G2JLM5 398 aa11.08□□□□□ -0.64
BRCA1-211ENST00000472490 C3orf85A0A1B0GTC6 90 aa11.08□□□□□ -0.64
BRCA1-211ENST00000472490 A6NHS1 94 aa11.08□□□□□ -0.64
BRCA1-211ENST00000472490 H0Y980 276 aa11.08□□□□□ -0.64
BRCA1-211ENST00000472490 SOX15O60248 233 aa11.08□□□□□ -0.64
BRCA1-211ENST00000472490 SNAPC5O75971 98 aa11.08□□□□□ -0.64
BRCA1-211ENST00000472490 BRI3O95415 125 aa11.08□□□□□ -0.64
BRCA1-211ENST00000472490 PI3P19957 117 aa11.08□□□□□ -0.64
BRCA1-211ENST00000472490 MYCNOSP40205 109 aa11.08□□□□□ -0.64
BRCA1-211ENST00000472490 RPL27AP46776 148 aaKnown RBP11.08□□□□□ -0.64
BRCA1-211ENST00000472490 TPPP2P59282 170 aa11.08□□□□□ -0.64
BRCA1-211ENST00000472490 KLF9Q13886 244 aaPredicted RBP11.08□□□□□ -0.64
BRCA1-211ENST00000472490 ZNF585BQ52M93 769 aa11.08□□□□□ -0.64
BRCA1-211ENST00000472490 TRIQKQ629K1 86 aa11.08□□□□□ -0.64
BRCA1-211ENST00000472490 LINC00299Q6ZSB3 139 aa11.08□□□□□ -0.64
BRCA1-211ENST00000472490 LCNL1Q6ZST4 164 aa11.08□□□□□ -0.64
BRCA1-211ENST00000472490 C8orf86Q6ZUL3 223 aa11.08□□□□□ -0.64
BRCA1-211ENST00000472490 ZNF491Q8N8L2 437 aa11.08□□□□□ -0.64
BRCA1-211ENST00000472490 OR5T1Q8NG75 326 aa11.08□□□□□ -0.64
BRCA1-211ENST00000472490 SRRQ9GZT4 340 aa11.08□□□□□ -0.64
BRCA1-211ENST00000472490 KLK15Q9H2R5 256 aa11.08□□□□□ -0.64
BRCA1-211ENST00000472490 FKBP11Q9NYL4 201 aa11.08□□□□□ -0.64
BRCA1-211ENST00000472490 TEX13DA0A0J9YY54 714 aaPredicted RBP11.07□□□□□ -0.64
BRCA1-211ENST00000472490 CCL24O00175 119 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms