RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 SPARTQ8N0X7 666 aa13.23□□□□□ -0.29
COL7A1-208ENST00000470076 PUSL1Q8N0Z8 303 aaKnown RBP13.23□□□□□ -0.29
COL7A1-208ENST00000470076 DYNLRB2Q8TF09 96 aa13.23□□□□□ -0.29
COL7A1-208ENST00000470076 FCGR1BQ92637 280 aa13.23□□□□□ -0.29
COL7A1-208ENST00000470076 SPATA2Q9UM82 520 aa13.23□□□□□ -0.29
COL7A1-208ENST00000470076 SSR3Q9UNL2 185 aa13.23□□□□□ -0.29
COL7A1-208ENST00000470076 RRP15Q9Y3B9 282 aaKnown RBP13.23□□□□□ -0.29
COL7A1-208ENST00000470076 CEPT1Q9Y6K0 416 aa13.23□□□□□ -0.29
COL7A1-208ENST00000470076 GGCTO75223 188 aaKnown RBP13.22□□□□□ -0.29
COL7A1-208ENST00000470076 TPPPO94811 219 aa13.22□□□□□ -0.29
COL7A1-208ENST00000470076 HRASP01112 189 aa13.22□□□□□ -0.29
COL7A1-208ENST00000470076 IL6RP08887 468 aaPredicted RBP13.22□□□□□ -0.29
COL7A1-208ENST00000470076 DEFB114Q30KQ6 69 aa13.22□□□□□ -0.29
COL7A1-208ENST00000470076 SFXN4Q6P4A7 337 aa13.22□□□□□ -0.29
COL7A1-208ENST00000470076 LINC00322Q6ZN03 302 aaPredicted RBP13.22□□□□□ -0.29
COL7A1-208ENST00000470076 MFSD4AQ8N468 514 aa13.22□□□□□ -0.29
COL7A1-208ENST00000470076 LGALS14Q8TCE9 139 aa13.22□□□□□ -0.29
COL7A1-208ENST00000470076 FYTTD1Q96QD9 318 aaKnown RBP13.22□□□□□ -0.29
COL7A1-208ENST00000470076 NEURL2Q9BR09 285 aa13.22□□□□□ -0.29
COL7A1-208ENST00000470076 PLEKHA3Q9HB20 300 aa13.22□□□□□ -0.29
COL7A1-208ENST00000470076 SLC2A9Q9NRM0 540 aa13.22□□□□□ -0.29
COL7A1-208ENST00000470076 RHBDL2Q9NX52 303 aa13.22□□□□□ -0.29
COL7A1-208ENST00000470076 TAS2R8Q9NYW2 309 aa13.22□□□□□ -0.29
COL7A1-208ENST00000470076 FBXL7Q9UJT9 491 aa13.22□□□□□ -0.29
COL7A1-208ENST00000470076 DMRT1Q9Y5R6 373 aa13.22□□□□□ -0.29
COL7A1-208ENST00000470076 C2orf70A6NJV1 201 aa13.21□□□□□ -0.29
COL7A1-208ENST00000470076 ZNF785A8K8V0 405 aa13.21□□□□□ -0.29
COL7A1-208ENST00000470076 PPP5D1E7EU14 171 aa13.21□□□□□ -0.29
COL7A1-208ENST00000470076 LGALS9O00182 355 aa13.21□□□□□ -0.29
COL7A1-208ENST00000470076 DHFRP00374 187 aa13.21□□□□□ -0.29
COL7A1-208ENST00000470076 ZNF735P0CB33 412 aa13.21□□□□□ -0.29
COL7A1-208ENST00000470076 KIR2DS2P43631 304 aa13.21□□□□□ -0.29
COL7A1-208ENST00000470076 SCAND1P57086 179 aa13.21□□□□□ -0.29
COL7A1-208ENST00000470076 BRWD1-AS2P59051 145 aa13.21□□□□□ -0.29
COL7A1-208ENST00000470076 MSMO1Q15800 293 aa13.21□□□□□ -0.29
COL7A1-208ENST00000470076 GAR1Q9NY12 217 aaKnown RBP13.21□□□□□ -0.29
COL7A1-208ENST00000470076 TECRQ9NZ01 308 aaKnown RBP13.21□□□□□ -0.29
COL7A1-208ENST00000470076 E7EUB6 86 aa13.2□□□□□ -0.3
COL7A1-208ENST00000470076 OR2C1O95371 312 aa13.2□□□□□ -0.3
COL7A1-208ENST00000470076 CRYGCP07315 174 aa13.2□□□□□ -0.3
COL7A1-208ENST00000470076 FOLR2P14207 255 aa13.2□□□□□ -0.3
COL7A1-208ENST00000470076 ARPC4P59998 168 aa13.2□□□□□ -0.3
COL7A1-208ENST00000470076 RPL8P62917 257 aaKnown RBP13.2□□□□□ -0.3
COL7A1-208ENST00000470076 KLK9Q2XQG4 91 aa13.2□□□□□ -0.3
COL7A1-208ENST00000470076 GPHB5Q86YW7 130 aa13.2□□□□□ -0.3
COL7A1-208ENST00000470076 BEST4Q8NFU0 473 aa13.2□□□□□ -0.3
COL7A1-208ENST00000470076 FANCD2OSQ96PS1 177 aa13.2□□□□□ -0.3
COL7A1-208ENST00000470076 AIFM2Q9BRQ8 373 aa13.2□□□□□ -0.3
COL7A1-208ENST00000470076 HIPK2Q9H2X6 1198 aa13.2□□□□□ -0.3
COL7A1-208ENST00000470076 ZC4H2Q9NQZ6 224 aa13.2□□□□□ -0.3
COL7A1-208ENST00000470076 KLK9Q9UKQ9 250 aa13.2□□□□□ -0.3
COL7A1-208ENST00000470076 DNAH1Q9P2D7 4330 aa13.2□□□□□ -0.3
COL7A1-208ENST00000470076 A0A1B0GW64 132 aa13.19□□□□□ -0.3
COL7A1-208ENST00000470076 HLA-AP01891 365 aaKnown RBP13.19□□□□□ -0.3
COL7A1-208ENST00000470076 CD7P09564 240 aa13.19□□□□□ -0.3
COL7A1-208ENST00000470076 HIST1H1BP16401 226 aaKnown RBP13.19□□□□□ -0.3
COL7A1-208ENST00000470076 PSMB6P28072 239 aa13.19□□□□□ -0.3
COL7A1-208ENST00000470076 C19orf35Q6ZS72 473 aa13.19□□□□□ -0.3
COL7A1-208ENST00000470076 SSX9Q7RTT3 188 aa13.19□□□□□ -0.3
COL7A1-208ENST00000470076 ZBTB34Q8NCN2 500 aa13.19□□□□□ -0.3
COL7A1-208ENST00000470076 IL17DQ8TAD2 202 aa13.19□□□□□ -0.3
COL7A1-208ENST00000470076 YTHDF1Q9BYJ9 559 aaKnown RBP13.19□□□□□ -0.3
COL7A1-208ENST00000470076 ETV7Q9Y603 341 aa13.19□□□□□ -0.3
COL7A1-208ENST00000470076 NDUFB8O95169 186 aa13.18□□□□□ -0.3
COL7A1-208ENST00000470076 AREGP15514 252 aa13.18□□□□□ -0.3
COL7A1-208ENST00000470076 CTRB1P17538 263 aa13.18□□□□□ -0.3
COL7A1-208ENST00000470076 FCGR2CP31995 323 aa13.18□□□□□ -0.3
COL7A1-208ENST00000470076 SDC2P34741 201 aa13.18□□□□□ -0.3
COL7A1-208ENST00000470076 ARL3P36405 182 aa13.18□□□□□ -0.3
COL7A1-208ENST00000470076 GUCA2BQ16661 112 aa13.18□□□□□ -0.3
COL7A1-208ENST00000470076 CTRB2Q6GPI1 263 aa13.18□□□□□ -0.3
COL7A1-208ENST00000470076 CLEC19AQ6UXS0 136 aa13.18□□□□□ -0.3
COL7A1-208ENST00000470076 DEFB125Q8N687 156 aa13.18□□□□□ -0.3
COL7A1-208ENST00000470076 OR13F1Q8NGS4 319 aa13.18□□□□□ -0.3
COL7A1-208ENST00000470076 OR4A5Q8NH83 315 aa13.18□□□□□ -0.3
COL7A1-208ENST00000470076 SECTM1Q8WVN6 248 aa13.18□□□□□ -0.3
COL7A1-208ENST00000470076 EEF1AKMT3Q96AZ1 226 aa13.18□□□□□ -0.3
COL7A1-208ENST00000470076 CCDC140Q96MF4 163 aa13.18□□□□□ -0.3
COL7A1-208ENST00000470076 GPHA2Q96T91 129 aa13.18□□□□□ -0.3
COL7A1-208ENST00000470076 Q9H521 79 aa13.18□□□□□ -0.3
COL7A1-208ENST00000470076 CCL28Q9NRJ3 127 aa13.18□□□□□ -0.3
COL7A1-208ENST00000470076 BET1LQ9NYM9 111 aa13.18□□□□□ -0.3
COL7A1-208ENST00000470076 TRAV18A0A075B6X5 111 aa13.17□□□□□ -0.3
COL7A1-208ENST00000470076 A0A0A6YYH2 397 aa13.17□□□□□ -0.3
COL7A1-208ENST00000470076 A6NJ64 397 aa13.17□□□□□ -0.3
COL7A1-208ENST00000470076 OR11H12B2RN74 326 aa13.17□□□□□ -0.3
COL7A1-208ENST00000470076 RBFOX2O43251 390 aaKnown RBP eCLIP13.17□□□□□ -0.3
COL7A1-208ENST00000470076 TNFSF12O43508 249 aa13.17□□□□□ -0.3
COL7A1-208ENST00000470076 DEFA4P12838 97 aa13.17□□□□□ -0.3
COL7A1-208ENST00000470076 HLA-GP17693 338 aa13.17□□□□□ -0.3
COL7A1-208ENST00000470076 CBLN1P23435 193 aa13.17□□□□□ -0.3
COL7A1-208ENST00000470076 MXD1Q05195 221 aa13.17□□□□□ -0.3
COL7A1-208ENST00000470076 TIMM50Q3ZCQ8 353 aa13.17□□□□□ -0.3
COL7A1-208ENST00000470076 FAM106AQ4KMX7 169 aa13.17□□□□□ -0.3
COL7A1-208ENST00000470076 OR4A47Q6IF82 309 aa13.17□□□□□ -0.3
COL7A1-208ENST00000470076 HOGA1Q86XE5 327 aa13.17□□□□□ -0.3
COL7A1-208ENST00000470076 SPAG16Q8N0X2 631 aa13.17□□□□□ -0.3
COL7A1-208ENST00000470076 GVQW1Q8N7I0 195 aa13.17□□□□□ -0.3
COL7A1-208ENST00000470076 SRD5A3Q9H8P0 318 aa13.17□□□□□ -0.3
COL7A1-208ENST00000470076 RETNQ9HD89 108 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms