RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 FAM19A3Q7Z5A8 133 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 SLC35E3Q7Z769 313 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 ZNF664Q8N3J9 261 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 PLPP5Q8NEB5 264 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 OR4S1Q8NGB4 309 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 OR5AP2Q8NGF4 316 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 OR2T27Q8NH04 317 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 OR51H1Q8NH63 302 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 OR9G1Q8NH87 305 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 PPTC7Q8NI37 304 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 FLVCR1-AS1Q8TAF5 88 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 RXFP4Q8TDU9 374 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 TMEM190Q8WZ59 177 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 NEURL3Q96EH8 262 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 RTL8AQ9BWD3 113 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 C1QTNF6Q9BXI9 259 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 DEFB127Q9H1M4 99 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 PRO1933Q9H354 126 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 CLCF1Q9UBD9 225 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 FIS1Q9Y3D6 152 aa3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 KTN1Q86UP2 1357 aaKnown RBP3.62□□□□□ -1.83
CCDC88A-210ENST00000468534 NSD3Q9BZ95 1437 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 PHLPP1O60346 1717 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 PCM1Q15154 2024 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 GRIN2AQ12879 1464 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 SMIM26A0A096LP01 95 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 EPOPA6NHQ4 379 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 KRTAP16-1A8MUX0 517 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 F5H5P2 479 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 K7EQD1 137 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 CDC42EP2O14613 210 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 MT-ND4LP03901 98 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 IGLL1P15814 213 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 HIST1H1DP16402 221 aaKnown RBP3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 VDAC1P21796 283 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 OR10J1P30954 320 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 TGFBR1P36897 503 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 MP68P56378 58 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 RPL26P61254 145 aaKnown RBP3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 ERVK-16P61578 105 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 EIF3IQ13347 325 aaKnown RBP3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 FBXL19-AS1Q494R0 122 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 C1orf100Q5SVJ3 147 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 TMEM75Q8N9X5 138 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 C5orf17Q8NAS9 161 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 ZNF519Q8TB69 540 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 AP1S3Q96PC3 154 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 SLC25A21Q9BQT8 299 aaPredicted RBP3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 NAA38Q9BRA0 125 aaKnown RBP3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 COMMD5Q9GZQ3 224 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 MED28Q9H204 178 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 FAM49BQ9NUQ9 324 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 TVP23BQ9NYZ1 205 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 RARRES3Q9UL19 164 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 POMPQ9Y244 141 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 COQ4Q9Y3A0 265 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 HES2Q9Y543 173 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 MYH10P35580 1976 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 CAMTA1Q9Y6Y1 1673 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 NAIPQ13075 1403 aa3.61□□□□□ -1.83
CCDC88A-210ENST00000468534 IGHV6-1A0A0B4J1U7 121 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 IGHV1-69DA0A0B4J2H0 117 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 IGHV3-38A0A0C4DH36 116 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 A0A0G2JMM0 328 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 A0A1W2PPB8 328 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 IZUMO1RA6ND01 250 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 KIR3DP1A8MWS1 328 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 A8MXK9 166 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 ZNF670-ZNF695F2Z2N8 137 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 TMEM250H0YL14 139 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 K7EQG2 157 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 K7N7A8 449 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 APOMO95445 188 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 NCR2O95944 276 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 SMIM10L2AP0DMW4 78 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 SMIM10L2BP0DMW5 78 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 AQP1P29972 269 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 ETV6P41212 452 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 GUCA1AP43080 201 aaPredicted RBP3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 P2RX1P51575 399 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 NCBP2P52298 156 aaKnown RBP eCLIP3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 ZNF138P52744 262 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 RBM11P57052 281 aaKnown RBP3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 DSCR10P59022 87 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 FKBP1AP62942 108 aaKnown RBP3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 GRB2P62993 217 aaKnown RBP3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 SRPXP78539 464 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 CLLU1OSQ5K130 101 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 FOXI2Q6ZQN5 318 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 LINC00299Q6ZSB3 139 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 PRR15Q8IV56 129 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 OR10D4PQ8NGN7 298 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 MAGOHBQ96A72 148 aaKnown RBP3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 ERMAPQ96PL5 475 aaPredicted RBP3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 SDF2Q99470 211 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 TM2D3Q9BRN9 247 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 GGTLC1Q9BX51 225 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 GABARAPL3Q9BY60 117 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 IMUPQ9GZP8 106 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 AICDAQ9GZX7 198 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms