RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 CX3CL1P78423 397 aa6.06□□□□□ -1.44
USP48-206ENST00000464577 SRYQ05066 204 aa6.06□□□□□ -1.44
USP48-206ENST00000464577 TBC1D28Q2M2D7 210 aa6.06□□□□□ -1.44
USP48-206ENST00000464577 SPATA45Q537H7 98 aa6.06□□□□□ -1.44
USP48-206ENST00000464577 LYSMD4Q5XG99 296 aa6.06□□□□□ -1.44
USP48-206ENST00000464577 TRAT1Q6PIZ9 186 aa6.06□□□□□ -1.44
USP48-206ENST00000464577 DNAJC4Q9NNZ3 241 aa6.06□□□□□ -1.44
USP48-206ENST00000464577 NRN1Q9NPD7 142 aa6.06□□□□□ -1.44
USP48-206ENST00000464577 OSTCQ9NRP0 149 aa6.06□□□□□ -1.44
USP48-206ENST00000464577 SLC25A10Q9UBX3 287 aaPredicted RBP6.06□□□□□ -1.44
USP48-206ENST00000464577 TBL2Q9Y4P3 447 aaKnown RBP6.06□□□□□ -1.44
USP48-206ENST00000464577 RNF114Q9Y508 228 aa6.06□□□□□ -1.44
USP48-206ENST00000464577 TRGV8A0A0C4DH27 118 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 IQCF6A8MYZ5 107 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 K7ESF4 209 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 SMPD2O60906 423 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 TNFSF15O95150 251 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 OTX2P32243 289 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 PCP4P48539 62 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 AMTP48728 403 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 HTD2P86397 168 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 ANKRD39Q53RE8 183 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 PRAMEF5Q5TYX0 476 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 PRAMEF6Q5VXH4 476 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 TMEM136Q6ZRR5 245 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 C19orf35Q6ZS72 473 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 MDP1Q86V88 176 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 KLHDC1Q8N7A1 406 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 ST6GALNAC3Q8NDV1 305 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 STARD4Q96DR4 205 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 COQ2Q96H96 371 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 ASCL3Q9NQ33 180 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 XIRP2A4UGR9 3374 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 A0A1W2PS18 150 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 FNDC10F2Z333 226 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 TCF21O43680 179 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 GFRA3O60609 400 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 HYPMO75409 117 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 ZNF324O75467 553 aaPredicted RBP6.05□□□□□ -1.44
USP48-206ENST00000464577 NDUFB8O95169 186 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 HLA-DQA1P01909 254 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 AMY1AP04745 511 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 ADH4P08319 380 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 DUTP33316 252 aaKnown RBP6.05□□□□□ -1.44
USP48-206ENST00000464577 TFPI2P48307 235 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 CEBPDP49716 269 aaPredicted RBP6.05□□□□□ -1.44
USP48-206ENST00000464577 HNRNPA3P51991 378 aaKnown RBP6.05□□□□□ -1.44
USP48-206ENST00000464577 PRRX1P54821 245 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 FOXF2Q12947 444 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 MRPL49Q13405 166 aaKnown RBP6.05□□□□□ -1.44
USP48-206ENST00000464577 EFNB3Q15768 340 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 FAM53AQ6NSI3 398 aaPredicted RBP6.05□□□□□ -1.44
USP48-206ENST00000464577 TIPARPQ7Z3E1 657 aaKnown RBP6.05□□□□□ -1.44
USP48-206ENST00000464577 GCNT2Q8N0V5 402 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 OR8I2Q8N0Y5 310 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 OR4A16Q8NH70 328 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 MRGPRDQ8TDS7 321 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 NPVFQ9HCQ7 196 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 HEYLQ9NQ87 328 aaPredicted RBP6.05□□□□□ -1.44
USP48-206ENST00000464577 NAT8BQ9UHF3 227 aa6.05□□□□□ -1.44
USP48-206ENST00000464577 ZNF407Q9C0G0 2248 aa6.04□□□□□ -1.44
USP48-206ENST00000464577 TOMM40O96008 361 aa6.04□□□□□ -1.44
USP48-206ENST00000464577 SP1P08047 785 aa6.04□□□□□ -1.44
USP48-206ENST00000464577 CELA3AP09093 270 aa6.04□□□□□ -1.44
USP48-206ENST00000464577 KIR2DS2P43631 304 aa6.04□□□□□ -1.44
USP48-206ENST00000464577 GNG4P50150 75 aa6.04□□□□□ -1.44
USP48-206ENST00000464577 ERVK-16P61578 105 aa6.04□□□□□ -1.44
USP48-206ENST00000464577 AESQ08117 197 aa6.04□□□□□ -1.44
USP48-206ENST00000464577 RAB31Q13636 194 aa6.04□□□□□ -1.44
USP48-206ENST00000464577 SSPNQ14714 243 aa6.04□□□□□ -1.44
USP48-206ENST00000464577 MMDQ15546 238 aa6.04□□□□□ -1.44
USP48-206ENST00000464577 CENPWQ5EE01 88 aa6.04□□□□□ -1.44
USP48-206ENST00000464577 STPG3Q8N7X2 389 aa6.04□□□□□ -1.44
USP48-206ENST00000464577 STPG4Q8N801 248 aa6.04□□□□□ -1.44
USP48-206ENST00000464577 C1orf159Q96HA4 380 aa6.04□□□□□ -1.44
USP48-206ENST00000464577 CDX2Q99626 313 aaPredicted RBP6.04□□□□□ -1.44
USP48-206ENST00000464577 TXN2Q99757 166 aa6.04□□□□□ -1.44
USP48-206ENST00000464577 FAM103A1Q9BTL3 118 aaKnown RBP6.04□□□□□ -1.44
USP48-206ENST00000464577 GAL3ST2Q9H3Q3 398 aa6.04□□□□□ -1.44
USP48-206ENST00000464577 TMEM167BQ9NRX6 74 aa6.04□□□□□ -1.44
USP48-206ENST00000464577 MRPL27Q9P0M9 148 aaKnown RBP6.04□□□□□ -1.44
USP48-206ENST00000464577 PSG11Q9UQ72 335 aa6.04□□□□□ -1.44
USP48-206ENST00000464577 LAMTOR2Q9Y2Q5 125 aa6.04□□□□□ -1.44
USP48-206ENST00000464577 MRPS16Q9Y3D3 137 aaKnown RBP6.04□□□□□ -1.44
USP48-206ENST00000464577 MYO9BQ13459 2157 aa6.04□□□□□ -1.44
USP48-206ENST00000464577 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.03□□□□□ -1.44
USP48-206ENST00000464577 C20orf202A1L168 122 aa6.03□□□□□ -1.44
USP48-206ENST00000464577 C15orf65H3BRN8 121 aa6.03□□□□□ -1.44
USP48-206ENST00000464577 BMPR1BO00238 502 aa6.03□□□□□ -1.44
USP48-206ENST00000464577 ISLRO14498 428 aa6.03□□□□□ -1.44
USP48-206ENST00000464577 SPINT2O43291 252 aa6.03□□□□□ -1.44
USP48-206ENST00000464577 GRPP07492 148 aa6.03□□□□□ -1.44
USP48-206ENST00000464577 FRMD6-AS1P0C7T7 363 aa6.03□□□□□ -1.44
USP48-206ENST00000464577 C3orf79P0CE67 100 aa6.03□□□□□ -1.44
USP48-206ENST00000464577 GPR12P47775 334 aa6.03□□□□□ -1.44
USP48-206ENST00000464577 GABRA2P47869 451 aa6.03□□□□□ -1.44
USP48-206ENST00000464577 CXCL12P48061 93 aa6.03□□□□□ -1.44
USP48-206ENST00000464577 DUSP3P51452 185 aaPredicted RBP6.03□□□□□ -1.44
USP48-206ENST00000464577 ZNF83P51522 516 aa6.03□□□□□ -1.44
USP48-206ENST00000464577 KLF3P57682 345 aaPredicted RBP6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms