RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	SOD3	P08294	240 aa		7.21	□□□□□ -1.26
SYNE1-215	ENST00000460912	PYY3	Q5JQD4	70 aa		7.21	□□□□□ -1.26
SYNE1-215	ENST00000460912	TEX36	Q5VZQ5	186 aa		7.21	□□□□□ -1.26
SYNE1-215	ENST00000460912	IL1F10	Q8WWZ1	152 aa		7.21	□□□□□ -1.26
SYNE1-215	ENST00000460912	TRIB1	Q96RU8	372 aa		7.21	□□□□□ -1.26
SYNE1-215	ENST00000460912	TMEM147	Q9BVK8	224 aa		7.21	□□□□□ -1.26
SYNE1-215	ENST00000460912	GGACT	Q9BVM4	153 aa		7.21	□□□□□ -1.26
SYNE1-215	ENST00000460912	PRDM13	Q9H4Q3	707 aa		7.21	□□□□□ -1.26
SYNE1-215	ENST00000460912	CEP295	Q9C0D2	2601 aa		7.21	□□□□□ -1.26
SYNE1-215	ENST00000460912	MARCH11	A6NNE9	402 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	IFNA10	P01566	189 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	TGFBR3	Q03167	851 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	ZNF718	Q3SXZ3	478 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	ZNF787	Q6DD87	383 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	CDPF1	Q6NVV7	123 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	OR51G1	Q8NGK1	321 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	UBALD1	Q8TB05	177 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	SNRNP40	Q96DI7	357 aa	Known RBP	7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	DCTN5	Q9BTE1	182 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	QTRT1	Q9BXR0	403 aa	Known RBP	7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	CTDSP1	Q9GZU7	261 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	CLN8	Q9UBY8	286 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	RBM7	Q9Y580	266 aa	Known RBP	7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	INTS1	Q8N201	2190 aa	Known RBP	7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	ADGRG4	Q8IZF6	3080 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	TENM4	Q6N022	2769 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	FNDC10	F2Z333	226 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	RPL23	P62829	140 aa	Known RBP	7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	HBG1	P69891	147 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	HBG2	P69892	147 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	MRPL49	Q13405	166 aa	Known RBP	7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	DOLPP1	Q86YN1	238 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	MCEMP1	Q8IX19	187 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	RPRML	Q8N4K4	120 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	GATAD1	Q8WUU5	269 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	PUS1	Q9Y606	427 aa	Known RBP eCLIP	7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	CTXND1	A0A1B0GTU2	59 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	PSMB11	A5LHX3	300 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	INS-IGF2	F8WCM5	200 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	MKRN2OS	H3BPM6	223 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	GGCT	O75223	188 aa	Known RBP	7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	FAM87A	P0C7U9	286 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	LOX	P28300	417 aa	Predicted RBP	7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	PRDX2	P32119	198 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	MEF2B	Q02080	365 aa	Predicted RBP	7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	OR5I1	Q13606	314 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	FBXL19-AS1	Q494R0	122 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	ST6GALNAC3	Q8NDV1	305 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	DOK5	Q9P104	306 aa		7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	FOXA2	Q9Y261	457 aa	Predicted RBP	7.2	□□□□□ -1.26
SYNE1-215	ENST00000460912	FSTL3	O95633	263 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	TGIF2LY	Q8IUE0	185 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	RNASEH2C	Q8TDP1	164 aa	Known RBP	7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	SNX22	Q96L94	193 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	MGST2	Q99735	147 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	TRBV20OR9-2	A0A075B6H5	130 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	MAP1LC3B2	A6NCE7	125 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	CRYAB	P02511	175 aa	Known RBP	7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	GRP	P07492	148 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	TAGLN2	P37802	199 aa	Known RBP	7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	FGF8	P55075	233 aa	Predicted RBP	7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	RPL15	P61313	204 aa	Known RBP	7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	GAMT	Q14353	236 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	TIMM23B	Q5SRD1	257 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	P4HA3	Q7Z4N8	544 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	MRGPRD	Q8TDS7	321 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	FRZB	Q92765	325 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	MAP1LC3B	Q9GZQ8	125 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	CNOT1	A5YKK6	2376 aa	Known RBP	7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	TRAV34	A0A0B4J273	112 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	ZNF320	A2RRD8	509 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	ZNF729	A6NN14	1252 aa	Predicted RBP	7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	PRR20E	P86478	221 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	PRR20C	P86479	221 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	PRR20D	P86480	221 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	PRR20B	P86481	221 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	PRR20A	P86496	221 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	SMIM21	Q3B7S5	101 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	TREML4	Q6UXN2	200 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	BHLHA15	Q7RTS1	189 aa	Predicted RBP	7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	GAFA1	Q96PS6	74 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	TMPRSS5	Q9H3S3	457 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	MSL2	Q9HCI7	577 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	GNG13	Q9P2W3	67 aa		7.19	□□□□□ -1.26
SYNE1-215	ENST00000460912	TRAV3	A0A0B4J244	114 aa		7.18	□□□□□ -1.26
SYNE1-215	ENST00000460912	UBE2L5P	A0A1B0GUS4	154 aa		7.18	□□□□□ -1.26
SYNE1-215	ENST00000460912	S100G	P29377	79 aa		7.18	□□□□□ -1.26
SYNE1-215	ENST00000460912	OPRK1	P41145	380 aa		7.18	□□□□□ -1.26
SYNE1-215	ENST00000460912	CT45A1	Q5HYN5	189 aa		7.18	□□□□□ -1.26
SYNE1-215	ENST00000460912	OR10G8	Q8NGN5	311 aa		7.18	□□□□□ -1.26
SYNE1-215	ENST00000460912	CT45A3	Q8NHU0	189 aa		7.18	□□□□□ -1.26
SYNE1-215	ENST00000460912	NIPSNAP3B	Q9BS92	247 aa		7.18	□□□□□ -1.26
SYNE1-215	ENST00000460912	MANBAL	Q9NQG1	85 aa		7.18	□□□□□ -1.26
SYNE1-215	ENST00000460912	LAMP3	Q9UQV4	416 aa		7.18	□□□□□ -1.26
SYNE1-215	ENST00000460912	RRH	O14718	337 aa		7.18	□□□□□ -1.26
SYNE1-215	ENST00000460912	VENTX	O95231	258 aa		7.18	□□□□□ -1.26
SYNE1-215	ENST00000460912	HPRT1	P00492	218 aa		7.18	□□□□□ -1.26
SYNE1-215	ENST00000460912	IFNA5	P01569	189 aa		7.18	□□□□□ -1.26

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