RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 SLC25A48Q6ZT89 311 aaKnown RBP11.2□□□□□ -0.62
CLK3-203ENST00000454830 LHX4Q969G2 390 aa11.2□□□□□ -0.62
CLK3-203ENST00000454830 RAB1BQ9H0U4 201 aa11.2□□□□□ -0.62
CLK3-203ENST00000454830 RBFOX2O43251 390 aaKnown RBP eCLIP11.19□□□□□ -0.62
CLK3-203ENST00000454830 CT45A6P0DMU7 189 aa11.19□□□□□ -0.62
CLK3-203ENST00000454830 CT45A5P0DMU8 189 aa11.19□□□□□ -0.62
CLK3-203ENST00000454830 CT45A7P0DMV0 189 aa11.19□□□□□ -0.62
CLK3-203ENST00000454830 UQCRFS1P47985 274 aa11.19□□□□□ -0.62
CLK3-203ENST00000454830 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.19□□□□□ -0.62
CLK3-203ENST00000454830 NCOR1P1Q9H4R4 102 aa11.19□□□□□ -0.62
CLK3-203ENST00000454830 DEFA4P12838 97 aa11.19□□□□□ -0.62
CLK3-203ENST00000454830 LOXP28300 417 aaPredicted RBP11.19□□□□□ -0.62
CLK3-203ENST00000454830 RAB11AP62491 216 aa11.19□□□□□ -0.62
CLK3-203ENST00000454830 RELBQ01201 579 aa11.19□□□□□ -0.62
CLK3-203ENST00000454830 CORO2AQ92828 525 aa11.19□□□□□ -0.62
CLK3-203ENST00000454830 AIFM2Q9BRQ8 373 aa11.19□□□□□ -0.62
CLK3-203ENST00000454830 SLC35B3Q9H1N7 401 aa11.19□□□□□ -0.62
CLK3-203ENST00000454830 RRHO14718 337 aa11.19□□□□□ -0.62
CLK3-203ENST00000454830 SFTPCP11686 197 aa11.19□□□□□ -0.62
CLK3-203ENST00000454830 DIAPH2-AS1Q14236 149 aa11.19□□□□□ -0.62
CLK3-203ENST00000454830 PDLIM3Q53GG5 364 aaPredicted RBP11.19□□□□□ -0.62
CLK3-203ENST00000454830 ZNF251Q9BRH9 671 aa11.19□□□□□ -0.62
CLK3-203ENST00000454830 ONECUT1Q9UBC0 465 aa11.19□□□□□ -0.62
CLK3-203ENST00000454830 OR51B2Q9Y5P1 312 aa11.19□□□□□ -0.62
CLK3-203ENST00000454830 MAP1LC3B2A6NCE7 125 aa11.18□□□□□ -0.62
CLK3-203ENST00000454830 EFNB3Q15768 340 aa11.18□□□□□ -0.62
CLK3-203ENST00000454830 MAP1LC3BQ9GZQ8 125 aa11.18□□□□□ -0.62
CLK3-203ENST00000454830 CARHSP1Q9Y2V2 147 aaKnown RBP11.18□□□□□ -0.62
CLK3-203ENST00000454830 ATP6V1FQ16864 119 aa11.18□□□□□ -0.62
CLK3-203ENST00000454830 CLRN3Q8NCR9 226 aa11.18□□□□□ -0.62
CLK3-203ENST00000454830 ZNF439Q8NDP4 499 aa11.18□□□□□ -0.62
CLK3-203ENST00000454830 RCC1LQ96I51 464 aaKnown RBP11.18□□□□□ -0.62
CLK3-203ENST00000454830 PLEKHA3Q9HB20 300 aa11.18□□□□□ -0.62
CLK3-203ENST00000454830 J3QR06 171 aa11.18□□□□□ -0.62
CLK3-203ENST00000454830 DNASE2O00115 360 aaPredicted RBP11.18□□□□□ -0.62
CLK3-203ENST00000454830 NDUFA2O43678 99 aa11.18□□□□□ -0.62
CLK3-203ENST00000454830 GNLYP22749 145 aa11.18□□□□□ -0.62
CLK3-203ENST00000454830 SPSB3Q6PJ21 355 aa11.18□□□□□ -0.62
CLK3-203ENST00000454830 TGIF2LXQ8IUE1 241 aa11.18□□□□□ -0.62
CLK3-203ENST00000454830 TIMD4Q96H15 378 aa11.18□□□□□ -0.62
CLK3-203ENST00000454830 COMMD5Q9GZQ3 224 aa11.18□□□□□ -0.62
CLK3-203ENST00000454830 C15orf62A8K5M9 175 aa11.17□□□□□ -0.62
CLK3-203ENST00000454830 FCN3O75636 299 aa11.17□□□□□ -0.62
CLK3-203ENST00000454830 CD1BP29016 333 aa11.17□□□□□ -0.62
CLK3-203ENST00000454830 KDF1Q8NAX2 398 aaPredicted RBP11.17□□□□□ -0.62
CLK3-203ENST00000454830 OR10G4Q8NGN3 311 aa11.17□□□□□ -0.62
CLK3-203ENST00000454830 OR10G9Q8NGN4 311 aa11.17□□□□□ -0.62
CLK3-203ENST00000454830 OR10G7Q8NGN6 311 aa11.17□□□□□ -0.62
CLK3-203ENST00000454830 FLYWCH2Q96CP2 140 aaKnown RBP11.17□□□□□ -0.62
CLK3-203ENST00000454830 UBTD1Q9HAC8 227 aa11.17□□□□□ -0.62
CLK3-203ENST00000454830 KIAA1456Q9P272 454 aa11.17□□□□□ -0.62
CLK3-203ENST00000454830 BTBD17A6NE02 478 aa11.17□□□□□ -0.62
CLK3-203ENST00000454830 C17orf112F2Z3M2 114 aa11.17□□□□□ -0.62
CLK3-203ENST00000454830 HSPE1P61604 102 aaKnown RBP11.17□□□□□ -0.62
CLK3-203ENST00000454830 FBXL19-AS1Q494R0 122 aa11.17□□□□□ -0.62
CLK3-203ENST00000454830 TMEM41BQ5BJD5 291 aa11.17□□□□□ -0.62
CLK3-203ENST00000454830 DDB2Q92466 427 aa11.17□□□□□ -0.62
CLK3-203ENST00000454830 A0A1W2PRD5 423 aa11.17□□□□□ -0.62
CLK3-203ENST00000454830 A0A1W2PRF3 423 aa11.17□□□□□ -0.62
CLK3-203ENST00000454830 A0A1W2PRM7 423 aa11.17□□□□□ -0.62
CLK3-203ENST00000454830 C15orf61A6NNL5 157 aa11.17□□□□□ -0.62
CLK3-203ENST00000454830 ITGB1BP1O14713 200 aa11.17□□□□□ -0.62
CLK3-203ENST00000454830 NPY1RP25929 384 aa11.17□□□□□ -0.62
CLK3-203ENST00000454830 SERF2P84101 59 aa11.17□□□□□ -0.62
CLK3-203ENST00000454830 LYPD6BQ8NI32 183 aa11.17□□□□□ -0.62
CLK3-203ENST00000454830 CDKN1AP38936 164 aa11.16□□□□□ -0.62
CLK3-203ENST00000454830 SSMEM1Q8WWF3 244 aa11.16□□□□□ -0.62
CLK3-203ENST00000454830 PSMG3Q9BT73 122 aaPredicted RBP11.16□□□□□ -0.62
CLK3-203ENST00000454830 SAA1P0DJI8 122 aaPredicted RBP11.16□□□□□ -0.62
CLK3-203ENST00000454830 AWAT1Q58HT5 328 aa11.16□□□□□ -0.62
CLK3-203ENST00000454830 MOB3BQ86TA1 216 aa11.16□□□□□ -0.62
CLK3-203ENST00000454830 SLC24A4Q8NFF2 622 aa11.16□□□□□ -0.62
CLK3-203ENST00000454830 OR8B3Q8NGG8 313 aa11.16□□□□□ -0.62
CLK3-203ENST00000454830 OR8B2Q96RD0 313 aa11.16□□□□□ -0.62
CLK3-203ENST00000454830 PPIAL4CA0A0B4J2A2 164 aa11.16□□□□□ -0.62
CLK3-203ENST00000454830 SRRM4A7MD48 611 aaKnown RBP11.16□□□□□ -0.62
CLK3-203ENST00000454830 PPIAL4GP0DN37 164 aa11.16□□□□□ -0.62
CLK3-203ENST00000454830 TMEM30BQ3MIR4 351 aa11.16□□□□□ -0.62
CLK3-203ENST00000454830 ACSM6Q6P461 480 aa11.16□□□□□ -0.62
CLK3-203ENST00000454830 CYB561D1Q8N8Q1 229 aa11.16□□□□□ -0.62
CLK3-203ENST00000454830 OR9G1Q8NH87 305 aa11.16□□□□□ -0.62
CLK3-203ENST00000454830 NPCDR1Q9BY65 106 aa11.16□□□□□ -0.62
CLK3-203ENST00000454830 PATZ1Q9HBE1 687 aaKnown RBP11.16□□□□□ -0.62
CLK3-203ENST00000454830 A0A1W2PPV4 95 aa11.15□□□□□ -0.62
CLK3-203ENST00000454830 RAB1CQ92928 201 aa11.15□□□□□ -0.62
CLK3-203ENST00000454830 TMPRSS5Q9H3S3 457 aa11.15□□□□□ -0.62
CLK3-203ENST00000454830 PRNDQ9UKY0 176 aa11.15□□□□□ -0.62
CLK3-203ENST00000454830 FAM208BQ5VWN6 2430 aa11.15□□□□□ -0.62
CLK3-203ENST00000454830 ACTL6BO94805 426 aa11.15□□□□□ -0.62
CLK3-203ENST00000454830 SOD3P08294 240 aa11.15□□□□□ -0.62
CLK3-203ENST00000454830 APELAP0DMC3 54 aa11.15□□□□□ -0.62
CLK3-203ENST00000454830 IGHV1-8P0DP01 117 aa11.15□□□□□ -0.62
CLK3-203ENST00000454830 IL3RAP26951 378 aa11.15□□□□□ -0.62
CLK3-203ENST00000454830 ZNF674Q2M3X9 581 aa11.15□□□□□ -0.62
CLK3-203ENST00000454830 C17orf50Q8WW18 174 aa11.15□□□□□ -0.62
CLK3-203ENST00000454830 KBTBD11O94819 623 aa11.15□□□□□ -0.63
CLK3-203ENST00000454830 SCAF4O95104 1147 aaKnown RBP11.15□□□□□ -0.63
CLK3-203ENST00000454830 CA2P00918 260 aa11.15□□□□□ -0.63
CLK3-203ENST00000454830 SSX7Q7RTT5 188 aa11.15□□□□□ -0.63
CLK3-203ENST00000454830 FAM216AQ8WUB2 273 aa11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms