RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 RHOGP84095 191 aa11.93□□□□□ -0.5
LIMS1-210ENST00000449684 EIF4EBP1Q13541 118 aaPredicted RBP11.93□□□□□ -0.5
LIMS1-210ENST00000449684 RPEL1Q2QD12 228 aa11.93□□□□□ -0.5
LIMS1-210ENST00000449684 MZT2AQ6P582 158 aa11.93□□□□□ -0.5
LIMS1-210ENST00000449684 ZNF818PQ6ZRF7 136 aa11.93□□□□□ -0.5
LIMS1-210ENST00000449684 FAM223AQ8IWN6 122 aa11.93□□□□□ -0.5
LIMS1-210ENST00000449684 OR51H1Q8NH63 302 aa11.93□□□□□ -0.5
LIMS1-210ENST00000449684 TMEM167AQ8TBQ9 72 aa11.93□□□□□ -0.5
LIMS1-210ENST00000449684 CD300LFQ8TDQ1 290 aa11.93□□□□□ -0.5
LIMS1-210ENST00000449684 CMTM3Q96MX0 182 aa11.93□□□□□ -0.5
LIMS1-210ENST00000449684 TNCP24821 2201 aa11.92□□□□□ -0.5
LIMS1-210ENST00000449684 HMX3A6NHT5 357 aa11.92□□□□□ -0.5
LIMS1-210ENST00000449684 FAM25AB3EWG3 89 aa11.92□□□□□ -0.5
LIMS1-210ENST00000449684 FAM25CB3EWG5 89 aa11.92□□□□□ -0.5
LIMS1-210ENST00000449684 FAM25GB3EWG6 89 aa11.92□□□□□ -0.5
LIMS1-210ENST00000449684 DHFRP00374 187 aa11.92□□□□□ -0.5
LIMS1-210ENST00000449684 HPRT1P00492 218 aa11.92□□□□□ -0.5
LIMS1-210ENST00000449684 PRH1P02810 166 aa11.92□□□□□ -0.5
LIMS1-210ENST00000449684 TSPAN5P62079 268 aa11.92□□□□□ -0.5
LIMS1-210ENST00000449684 RPL8P62917 257 aaKnown RBP11.92□□□□□ -0.5
LIMS1-210ENST00000449684 DYRK1AQ13627 763 aa11.92□□□□□ -0.5
LIMS1-210ENST00000449684 ZNF343Q6P1L6 599 aa11.92□□□□□ -0.5
LIMS1-210ENST00000449684 SNX29P2Q8IUI4 249 aa11.92□□□□□ -0.5
LIMS1-210ENST00000449684 CMTM1Q8IZ96 169 aa11.92□□□□□ -0.5
LIMS1-210ENST00000449684 PUSL1Q8N0Z8 303 aaKnown RBP11.92□□□□□ -0.5
LIMS1-210ENST00000449684 TTC9CQ8N5M4 171 aa11.92□□□□□ -0.5
LIMS1-210ENST00000449684 DMBX1Q8NFW5 382 aa11.92□□□□□ -0.5
LIMS1-210ENST00000449684 OR6F1Q8NGZ6 308 aa11.92□□□□□ -0.5
LIMS1-210ENST00000449684 OR4A5Q8NH83 315 aa11.92□□□□□ -0.5
LIMS1-210ENST00000449684 AP3S1Q92572 193 aa11.92□□□□□ -0.5
LIMS1-210ENST00000449684 AKIP1Q9NQ31 210 aa11.92□□□□□ -0.5
LIMS1-210ENST00000449684 LSM4Q9Y4Z0 139 aaKnown RBP11.92□□□□□ -0.5
LIMS1-210ENST00000449684 SMAD5-AS1Q9Y6J3 95 aa11.92□□□□□ -0.5
LIMS1-210ENST00000449684 SORL1Q92673 2214 aa11.91□□□□□ -0.5
LIMS1-210ENST00000449684 RBFOX2O43251 390 aaKnown RBP eCLIP11.91□□□□□ -0.5
LIMS1-210ENST00000449684 NHLRC4P0CG21 123 aaPredicted RBP11.91□□□□□ -0.5
LIMS1-210ENST00000449684 DEFA4P12838 97 aa11.91□□□□□ -0.5
LIMS1-210ENST00000449684 GP9P14770 177 aa11.91□□□□□ -0.5
LIMS1-210ENST00000449684 NQO2P16083 231 aa11.91□□□□□ -0.5
LIMS1-210ENST00000449684 SPNP16150 400 aa11.91□□□□□ -0.5
LIMS1-210ENST00000449684 HLA-DMAP28067 261 aa11.91□□□□□ -0.5
LIMS1-210ENST00000449684 S100GP29377 79 aa11.91□□□□□ -0.5
LIMS1-210ENST00000449684 SYNJ2BPP57105 145 aa11.91□□□□□ -0.5
LIMS1-210ENST00000449684 BRWD1-AS2P59051 145 aa11.91□□□□□ -0.5
LIMS1-210ENST00000449684 TAS2R31P59538 309 aa11.91□□□□□ -0.5
LIMS1-210ENST00000449684 EXOSC2Q13868 293 aaKnown RBP11.91□□□□□ -0.5
LIMS1-210ENST00000449684 OR4A47Q6IF82 309 aa11.91□□□□□ -0.5
LIMS1-210ENST00000449684 C11orf87Q6NUJ2 197 aa11.91□□□□□ -0.5
LIMS1-210ENST00000449684 DHRS11Q6UWP2 260 aa11.91□□□□□ -0.5
LIMS1-210ENST00000449684 NECAP1Q8NC96 275 aa11.91□□□□□ -0.5
LIMS1-210ENST00000449684 BET1LQ9NYM9 111 aa11.91□□□□□ -0.5
LIMS1-210ENST00000449684 ZNF257Q9Y2Q1 563 aa11.91□□□□□ -0.5
LIMS1-210ENST00000449684 HPGDSO60760 199 aa11.9□□□□□ -0.5
LIMS1-210ENST00000449684 OR2J3O76001 311 aa11.9□□□□□ -0.5
LIMS1-210ENST00000449684 HLA-GP17693 338 aa11.9□□□□□ -0.5
LIMS1-210ENST00000449684 NAT1P18440 290 aa11.9□□□□□ -0.5
LIMS1-210ENST00000449684 GNRHRP30968 328 aa11.9□□□□□ -0.5
LIMS1-210ENST00000449684 HRH1P35367 487 aa11.9□□□□□ -0.5
LIMS1-210ENST00000449684 ERVK-16P61578 105 aa11.9□□□□□ -0.5
LIMS1-210ENST00000449684 KLF5Q13887 457 aaPredicted RBP11.9□□□□□ -0.5
LIMS1-210ENST00000449684 GPR107Q5VW38 600 aa11.9□□□□□ -0.5
LIMS1-210ENST00000449684 OR9G4Q8NGQ1 327 aa11.9□□□□□ -0.5
LIMS1-210ENST00000449684 MOB3AQ96BX8 217 aa11.9□□□□□ -0.5
LIMS1-210ENST00000449684 MRPS26Q9BYN8 205 aaKnown RBP11.9□□□□□ -0.5
LIMS1-210ENST00000449684 COMMD5Q9GZQ3 224 aa11.9□□□□□ -0.5
LIMS1-210ENST00000449684 SCPEP1Q9HB40 452 aa11.9□□□□□ -0.5
LIMS1-210ENST00000449684 SLC2A9Q9NRM0 540 aa11.9□□□□□ -0.5
LIMS1-210ENST00000449684 ANAPC10Q9UM13 185 aa11.9□□□□□ -0.5
LIMS1-210ENST00000449684 NPIPB5A8MRT5 1133 aa11.89□□□□□ -0.51
LIMS1-210ENST00000449684 TEX22C9J3V5 150 aa11.89□□□□□ -0.51
LIMS1-210ENST00000449684 TRBV12-3P01733 135 aa11.89□□□□□ -0.51
LIMS1-210ENST00000449684 RLN1P04808 185 aa11.89□□□□□ -0.51
LIMS1-210ENST00000449684 IL6RP08887 468 aaPredicted RBP11.89□□□□□ -0.51
LIMS1-210ENST00000449684 ELK1P19419 428 aa11.89□□□□□ -0.51
LIMS1-210ENST00000449684 C15orf32Q32M92 178 aa11.89□□□□□ -0.51
LIMS1-210ENST00000449684 FAM209BQ5JX69 171 aa11.89□□□□□ -0.51
LIMS1-210ENST00000449684 LPCAT3Q6P1A2 487 aa11.89□□□□□ -0.51
LIMS1-210ENST00000449684 HAPLN4Q86UW8 402 aa11.89□□□□□ -0.51
LIMS1-210ENST00000449684 ASCL2Q99929 193 aa11.89□□□□□ -0.51
LIMS1-210ENST00000449684 PLEKHA2Q9HB19 425 aa11.89□□□□□ -0.51
LIMS1-210ENST00000449684 PEMTQ9UBM1 199 aa11.89□□□□□ -0.51
LIMS1-210ENST00000449684 FBXL7Q9UJT9 491 aa11.89□□□□□ -0.51
LIMS1-210ENST00000449684 TRBV9A0A0B4J1U6 114 aa11.88□□□□□ -0.51
LIMS1-210ENST00000449684 GPR31O00270 319 aa11.88□□□□□ -0.51
LIMS1-210ENST00000449684 PGLYRP1O75594 196 aaPredicted RBP11.88□□□□□ -0.51
LIMS1-210ENST00000449684 S1PR2O95136 353 aa11.88□□□□□ -0.51
LIMS1-210ENST00000449684 GABARAPO95166 117 aa11.88□□□□□ -0.51
LIMS1-210ENST00000449684 ZNF735P0CB33 412 aa11.88□□□□□ -0.51
LIMS1-210ENST00000449684 SMIM18P0DKX4 95 aa11.88□□□□□ -0.51
LIMS1-210ENST00000449684 RPA2P15927 270 aa11.88□□□□□ -0.51
LIMS1-210ENST00000449684 ZNF182P17025 639 aaPredicted RBP11.88□□□□□ -0.51
LIMS1-210ENST00000449684 RCVRNP35243 200 aa11.88□□□□□ -0.51
LIMS1-210ENST00000449684 ZNF45Q02386 682 aa11.88□□□□□ -0.51
LIMS1-210ENST00000449684 GPR141Q7Z602 305 aa11.88□□□□□ -0.51
LIMS1-210ENST00000449684 GPX8Q8TED1 209 aa11.88□□□□□ -0.51
LIMS1-210ENST00000449684 NAA50Q9GZZ1 169 aaKnown RBP11.88□□□□□ -0.51
LIMS1-210ENST00000449684 COMMD9Q9P000 198 aa11.88□□□□□ -0.51
LIMS1-210ENST00000449684 ADAM30Q9UKF2 790 aa11.88□□□□□ -0.51
LIMS1-210ENST00000449684 E7EUB6 86 aa11.87□□□□□ -0.51
LIMS1-210ENST00000449684 H0Y980 276 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms