RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 OR2M2Q96R28 347 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 DEFB126Q9BYW3 111 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 LRTM1Q9HBL6 345 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 NEU3Q9UQ49 428 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 CLTCQ00610 1675 aaKnown RBP1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 TMEM131Q92545 1883 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 CTTNBP2Q8WZ74 1663 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 THSD7AQ9UPZ6 1657 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 BORCS7-ASMTA0A0B4J1R7 106 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 IGHV3-66A0A0C4DH42 116 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 A0A1W2PQ67 120 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 A6NDX4 124 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 H7C423 109 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 J3KT08 172 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 K7ERS5 55 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 CYB5BO43169 146 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 TRAF3IP2O43734 574 aaPredicted RBP1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 APOMO95445 188 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 S100PP25815 95 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 THBS3P49746 956 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 KIAA0040Q15053 153 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 PDGFRLQ15198 375 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 LAIR2Q6ISS4 152 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 IGFL2Q6UWQ7 119 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 ORMDL3Q8N138 153 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 Q8N9W7 124 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 FER1L6-AS1Q8NA97 138 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 OR4D11Q8NGI4 311 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 FAM57AQ8TBR7 257 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 THTPAQ9BU02 230 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 TMEM126AQ9H061 195 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 ZNF696Q9H7X3 374 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 SDF2L1Q9HCN8 221 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 TVP23BQ9NYZ1 205 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 AK3Q9UIJ7 227 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 CCDC171Q6TFL3 1326 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 VWA8A3KMH1 1905 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 CCDC18Q5T9S5 1454 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 RBBP6Q7Z6E9 1792 aaKnown RBP1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 IGHV1OR15-9A0A0B4J2B8 117 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 TMEM189A5PLL7 270 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 C5orf63A6NC05 138 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 LINC00862A6NCI5 91 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 CCDC160A6NGH7 325 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 ISLRO14498 428 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 OR7C2O60412 319 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 PSG2P11465 335 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 CYBAP13498 195 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 MMDQ15546 238 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 C12orf74Q32Q52 190 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 HIGD2BQ4VC39 106 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 TNFAIP8L3Q5GJ75 292 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 KLHDC8BQ8IXV7 354 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 Q8N377 158 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 OR5P3Q8WZ94 311 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 GNPNAT1Q96EK6 184 aaPredicted RBP1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 TBL1YQ9BQ87 522 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 CHST6Q9GZX3 395 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 ZNF556Q9HAH1 456 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 SLC23A2Q9UGH3 650 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 CSAG2Q9Y5P2 127 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 TRBV20OR9-2A0A075B6H5 130 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 IGHV1-45A0A0A0MS14 117 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 IGKV6D-21A0A0A0MT36 114 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 CCL15-CCL14A0A0B4J2E2 113 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 A0A1B0GV90 55 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 A8MWL6 223 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 J3QRK9 145 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 GCM2O75603 506 aaPredicted RBP1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 POP7O75817 140 aaKnown RBP1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 IGHV3-11P01762 117 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 LGALS1P09382 135 aaKnown RBP1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 CCL1P22362 96 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 RAB13P51153 203 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 KRTAP10-2P60368 255 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 TBPL1P62380 186 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 NEDD8Q15843 81 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 CCL15Q16663 113 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 MARCH3Q86UD3 253 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 YIPF7Q8N8F6 280 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 RMI2Q96E14 147 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 PYURFQ96I23 114 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 CCDC115Q96NT0 180 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 ZNF649Q9BS31 505 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 SAMD10Q9BYL1 202 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 C20orf27Q9GZN8 174 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 WDR61Q9GZS3 305 aaKnown RBP1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 TMEM222Q9H0R3 208 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 HSPB8Q9UJY1 196 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 ITPR3Q14573 2671 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 FAM186AA6NE01 2351 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 POLQO75417 2590 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 SLIT3O75094 1523 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 SCN5AQ14524 2016 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 IGLV11-55A0A075B6I3 123 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 FAM25AB3EWG3 89 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 FAM25CB3EWG5 89 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 FAM25GB3EWG6 89 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 F8W036 122 aa1.7□□□□□ -2.14
CCDC88A-208ENST00000444458 M0R2Z0 102 aa1.7□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms