RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 OR51M1Q9H341 326 aa13.19□□□□□ -0.3
SHQ1-202ENST00000444040 IL19Q9UHD0 177 aa13.19□□□□□ -0.3
SHQ1-202ENST00000444040 TCF19Q9Y242 345 aa13.19□□□□□ -0.3
SHQ1-202ENST00000444040 TRAV38-1A0A0B4J264 116 aa13.18□□□□□ -0.3
SHQ1-202ENST00000444040 TM4SF5O14894 197 aa13.18□□□□□ -0.3
SHQ1-202ENST00000444040 SOX15O60248 233 aa13.18□□□□□ -0.3
SHQ1-202ENST00000444040 NEIL1Q96FI4 390 aaPredicted RBP13.18□□□□□ -0.3
SHQ1-202ENST00000444040 ZNF318Q5VUA4 2279 aa13.18□□□□□ -0.3
SHQ1-202ENST00000444040 BOD1L1Q8NFC6 3051 aa13.18□□□□□ -0.3
SHQ1-202ENST00000444040 TRGV8A0A0C4DH27 118 aa13.18□□□□□ -0.3
SHQ1-202ENST00000444040 SMCO3A2RU48 225 aa13.18□□□□□ -0.3
SHQ1-202ENST00000444040 A8MXE2 369 aa13.18□□□□□ -0.3
SHQ1-202ENST00000444040 TNFAIP6P98066 277 aaPredicted RBP13.18□□□□□ -0.3
SHQ1-202ENST00000444040 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.18□□□□□ -0.3
SHQ1-202ENST00000444040 ZNF439Q8NDP4 499 aa13.18□□□□□ -0.3
SHQ1-202ENST00000444040 MS4A5Q9H3V2 200 aa13.18□□□□□ -0.3
SHQ1-202ENST00000444040 HCFC1P51610 2035 aa13.18□□□□□ -0.3
SHQ1-202ENST00000444040 C15orf61A6NNL5 157 aa13.17□□□□□ -0.3
SHQ1-202ENST00000444040 OPRK1P41145 380 aa13.17□□□□□ -0.3
SHQ1-202ENST00000444040 C1orf159Q96HA4 380 aa13.17□□□□□ -0.3
SHQ1-202ENST00000444040 GAFA1Q96PS6 74 aa13.17□□□□□ -0.3
SHQ1-202ENST00000444040 MGST2Q99735 147 aa13.17□□□□□ -0.3
SHQ1-202ENST00000444040 RAB9BQ9NP90 201 aa13.17□□□□□ -0.3
SHQ1-202ENST00000444040 DSCAMO60469 2012 aa13.17□□□□□ -0.3
SHQ1-202ENST00000444040 CNOT1A5YKK6 2376 aaKnown RBP13.17□□□□□ -0.3
SHQ1-202ENST00000444040 C11orf94C9JXX5 98 aa13.17□□□□□ -0.3
SHQ1-202ENST00000444040 SOD3P08294 240 aa13.17□□□□□ -0.3
SHQ1-202ENST00000444040 GFI1BQ5VTD9 330 aa13.17□□□□□ -0.3
SHQ1-202ENST00000444040 ZNF383Q8NA42 475 aa13.17□□□□□ -0.3
SHQ1-202ENST00000444040 OR51G1Q8NGK1 321 aa13.17□□□□□ -0.3
SHQ1-202ENST00000444040 RHOVQ96L33 236 aa13.17□□□□□ -0.3
SHQ1-202ENST00000444040 GAR1Q9NY12 217 aaKnown RBP13.17□□□□□ -0.3
SHQ1-202ENST00000444040 MIOXQ9UGB7 285 aa13.17□□□□□ -0.3
SHQ1-202ENST00000444040 TRGV10A0A0A0MS01 117 aa13.17□□□□□ -0.3
SHQ1-202ENST00000444040 CRYABP02511 175 aaKnown RBP13.17□□□□□ -0.3
SHQ1-202ENST00000444040 CD40P25942 277 aa13.17□□□□□ -0.3
SHQ1-202ENST00000444040 LAMA5O15230 3695 aa13.16□□□□□ -0.3
SHQ1-202ENST00000444040 LINC00587B1AMM8 73 aa13.16□□□□□ -0.3
SHQ1-202ENST00000444040 THBS3P49746 956 aa13.16□□□□□ -0.3
SHQ1-202ENST00000444040 OR4A47Q6IF82 309 aa13.16□□□□□ -0.3
SHQ1-202ENST00000444040 ZNF788Q6ZQV5 615 aa13.16□□□□□ -0.3
SHQ1-202ENST00000444040 HIST3H2BBQ8N257 126 aa13.16□□□□□ -0.3
SHQ1-202ENST00000444040 FAM57AQ8TBR7 257 aa13.16□□□□□ -0.3
SHQ1-202ENST00000444040 GGTLC1Q9BX51 225 aa13.16□□□□□ -0.3
SHQ1-202ENST00000444040 LINC00574Q9H8X3 128 aa13.16□□□□□ -0.3
SHQ1-202ENST00000444040 PATZ1Q9HBE1 687 aaKnown RBP13.16□□□□□ -0.3
SHQ1-202ENST00000444040 TMEM14BQ9NUH8 114 aa13.16□□□□□ -0.3
SHQ1-202ENST00000444040 LSM4Q9Y4Z0 139 aaKnown RBP13.16□□□□□ -0.3
SHQ1-202ENST00000444040 SELENOVP59797 346 aa13.16□□□□□ -0.3
SHQ1-202ENST00000444040 PYY3Q5JQD4 70 aa13.16□□□□□ -0.3
SHQ1-202ENST00000444040 DEFB108BQ8NET1 73 aa13.16□□□□□ -0.3
SHQ1-202ENST00000444040 OR10A7Q8NGE5 316 aa13.16□□□□□ -0.3
SHQ1-202ENST00000444040 CCL13Q99616 98 aa13.16□□□□□ -0.3
SHQ1-202ENST00000444040 SRD5A3Q9H8P0 318 aa13.16□□□□□ -0.3
SHQ1-202ENST00000444040 FOXA2Q9Y261 457 aaPredicted RBP13.16□□□□□ -0.3
SHQ1-202ENST00000444040 GYPAP02724 150 aa13.15□□□□□ -0.3
SHQ1-202ENST00000444040 CCKARP32238 428 aa13.15□□□□□ -0.3
SHQ1-202ENST00000444040 MRPS11P82912 194 aaKnown RBP13.15□□□□□ -0.3
SHQ1-202ENST00000444040 MIC13Q5XKP0 118 aa13.15□□□□□ -0.3
SHQ1-202ENST00000444040 TGIF2LYQ8IUE0 185 aa13.15□□□□□ -0.3
SHQ1-202ENST00000444040 TET2Q6N021 2002 aaPredicted RBP13.15□□□□□ -0.3
SHQ1-202ENST00000444040 ELOA3CA0A087WX78 387 aaPredicted RBP13.15□□□□□ -0.3
SHQ1-202ENST00000444040 A0A1W2PPV4 95 aa13.15□□□□□ -0.3
SHQ1-202ENST00000444040 H7BYZ3 331 aa13.15□□□□□ -0.3
SHQ1-202ENST00000444040 PPP1R2P9O14990 202 aa13.15□□□□□ -0.3
SHQ1-202ENST00000444040 MMP23AO75900 390 aa13.15□□□□□ -0.3
SHQ1-202ENST00000444040 VENTXO95231 258 aa13.15□□□□□ -0.3
SHQ1-202ENST00000444040 BMP5P22003 454 aa13.15□□□□□ -0.3
SHQ1-202ENST00000444040 C4orf17Q53FE4 359 aa13.15□□□□□ -0.3
SHQ1-202ENST00000444040 LYG1Q8N1E2 194 aa13.15□□□□□ -0.3
SHQ1-202ENST00000444040 FAM216BQ8N7L0 139 aa13.15□□□□□ -0.3
SHQ1-202ENST00000444040 NECAP1Q8NC96 275 aa13.15□□□□□ -0.3
SHQ1-202ENST00000444040 GPR61Q9BZJ8 451 aa13.15□□□□□ -0.3
SHQ1-202ENST00000444040 IDI2-AS1Q9NZ38 188 aa13.15□□□□□ -0.3
SHQ1-202ENST00000444040 PXMP4Q9Y6I8 212 aa13.15□□□□□ -0.3
SHQ1-202ENST00000444040 S100PP25815 95 aa13.14□□□□□ -0.31
SHQ1-202ENST00000444040 GALR1P47211 349 aa13.14□□□□□ -0.31
SHQ1-202ENST00000444040 ATP5G3P48201 142 aa13.14□□□□□ -0.31
SHQ1-202ENST00000444040 HSPE1P61604 102 aaKnown RBP13.14□□□□□ -0.31
SHQ1-202ENST00000444040 GNB1P62873 340 aa13.14□□□□□ -0.31
SHQ1-202ENST00000444040 POU2AF1Q16633 256 aa13.14□□□□□ -0.31
SHQ1-202ENST00000444040 KRTCAP3Q53RY4 240 aa13.14□□□□□ -0.31
SHQ1-202ENST00000444040 CORO2AQ92828 525 aa13.14□□□□□ -0.31
SHQ1-202ENST00000444040 ANAPC16Q96DE5 110 aa13.14□□□□□ -0.31
SHQ1-202ENST00000444040 NPVFQ9HCQ7 196 aa13.14□□□□□ -0.31
SHQ1-202ENST00000444040 DCAF16Q9NXF7 216 aa13.14□□□□□ -0.31
SHQ1-202ENST00000444040 DSCAML1Q8TD84 2053 aa13.14□□□□□ -0.31
SHQ1-202ENST00000444040 ZNF729A6NN14 1252 aaPredicted RBP13.14□□□□□ -0.31
SHQ1-202ENST00000444040 PDE6DO43924 150 aa13.14□□□□□ -0.31
SHQ1-202ENST00000444040 STAG3L2P0CL84 134 aa13.14□□□□□ -0.31
SHQ1-202ENST00000444040 STAG3L3P0CL85 134 aa13.14□□□□□ -0.31
SHQ1-202ENST00000444040 S100A2P29034 98 aa13.14□□□□□ -0.31
SHQ1-202ENST00000444040 NUBP1P53384 320 aa13.14□□□□□ -0.31
SHQ1-202ENST00000444040 ARSJQ5FYB0 599 aaPredicted RBP13.14□□□□□ -0.31
SHQ1-202ENST00000444040 NUP37Q8NFH4 326 aa13.14□□□□□ -0.31
SHQ1-202ENST00000444040 OR4X1Q8NH49 305 aa13.14□□□□□ -0.31
SHQ1-202ENST00000444040 ZCCHC14Q8WYQ9 949 aaKnown RBP13.14□□□□□ -0.31
SHQ1-202ENST00000444040 ELOVL1Q9BW60 279 aa13.14□□□□□ -0.31
SHQ1-202ENST00000444040 IL6RP08887 468 aaPredicted RBP13.13□□□□□ -0.31
SHQ1-202ENST00000444040 UBE2G2P60604 165 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms