RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 FZR1Q9UM11 496 aa13.59□□□□□ -0.23
CLCNKA-203ENST00000439316 RAXQ9Y2V3 346 aa13.59□□□□□ -0.23
CLCNKA-203ENST00000439316 TRAV38-1A0A0B4J264 116 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 HPRT1P00492 218 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 ATP5G3P48201 142 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 SPCS3P61009 180 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 PDLIM3Q53GG5 364 aaPredicted RBP13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 MBNL2Q5VZF2 373 aaKnown RBP13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 Q8TCH9 128 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 LRRC29Q8WV35 223 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 SARAFQ96BY9 339 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 PRO1933Q9H354 126 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 JPT1Q9UK76 154 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 FUT9Q9Y231 359 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 TP53TG5Q9Y2B4 290 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 PRSS46E5RG02 174 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 F6UZH7 168 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 FCGR3BO75015 233 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 IGLV1-44P01699 117 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 CRYAAP02489 173 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 PRDX2P32119 198 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 OPRK1P41145 380 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 VDAC2P45880 294 aaPredicted RBP13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 RPP30P78346 268 aaKnown RBP13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 ZNF718Q3SXZ3 478 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 PRAMEF5Q5TYX0 476 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 VWA1Q6PCB0 445 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 ZNF600Q6ZNG1 722 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 FAM90A1Q86YD7 464 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 OR52E5Q8NH55 327 aa13.58□□□□□ -0.24
CLCNKA-203ENST00000439316 INTS1Q8N201 2190 aaKnown RBP13.57□□□□□ -0.24
CLCNKA-203ENST00000439316 CACNA1AO00555 2505 aa13.57□□□□□ -0.24
CLCNKA-203ENST00000439316 RBFOX2O43251 390 aaKnown RBP eCLIP13.57□□□□□ -0.24
CLCNKA-203ENST00000439316 CHRNA7P36544 502 aa13.57□□□□□ -0.24
CLCNKA-203ENST00000439316 FABP6P51161 128 aa13.57□□□□□ -0.24
CLCNKA-203ENST00000439316 EDDM3BP56851 147 aa13.57□□□□□ -0.24
CLCNKA-203ENST00000439316 EDDM3AQ14507 147 aa13.57□□□□□ -0.24
CLCNKA-203ENST00000439316 LTC4SQ16873 150 aa13.57□□□□□ -0.24
CLCNKA-203ENST00000439316 TMEM144Q7Z5S9 345 aa13.57□□□□□ -0.24
CLCNKA-203ENST00000439316 A0A087X0M5 115 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 A0A1B0GX30 115 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 EGR1P18146 543 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 GCH1P30793 250 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 TMPRSS3P57727 454 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 UBE2G2P60604 165 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 MORN2Q502X0 79 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 TREML4Q6UXN2 200 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 UNQ6494/PRO21346Q6UXR6 183 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 C9orf106Q8NAJ2 232 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 IMMP2LQ96T52 175 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 SPTA1P02549 2419 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 IGHV2OR16-5A0A0B4J2B6 119 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 A0A1W2PPV4 95 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 YPEL1O60688 119 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 IL3RAP26951 378 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 RPL15P61313 204 aaKnown RBP13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 CR1LQ2VPA4 569 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 FAM78BQ5VT40 261 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 CST9LP1Q5W188 147 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 OR4A16Q8NH70 328 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 TMEM37Q8WXS4 190 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 MEGF10Q96KG7 1140 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 YPEL2Q96QA6 119 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 TXNDC17Q9BRA2 123 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 ZNF71Q9NQZ8 489 aaPredicted RBP13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 GNG12Q9UBI6 72 aa13.56□□□□□ -0.24
CLCNKA-203ENST00000439316 ZGRF1Q86YA3 2104 aa13.55□□□□□ -0.24
CLCNKA-203ENST00000439316 CACNA1DQ01668 2161 aa13.55□□□□□ -0.24
CLCNKA-203ENST00000439316 IGKV1D-17A0A075B6S4 117 aa13.55□□□□□ -0.24
CLCNKA-203ENST00000439316 SRRM5B3KS81 715 aa13.55□□□□□ -0.24
CLCNKA-203ENST00000439316 M0R1X1 148 aa13.55□□□□□ -0.24
CLCNKA-203ENST00000439316 RRHO14718 337 aa13.55□□□□□ -0.24
CLCNKA-203ENST00000439316 NDUFB4O95168 129 aa13.55□□□□□ -0.24
CLCNKA-203ENST00000439316 GCGP01275 180 aa13.55□□□□□ -0.24
CLCNKA-203ENST00000439316 BMP5P22003 454 aa13.55□□□□□ -0.24
CLCNKA-203ENST00000439316 MZT1Q08AG7 82 aa13.55□□□□□ -0.24
CLCNKA-203ENST00000439316 SSX9Q7RTT3 188 aa13.55□□□□□ -0.24
CLCNKA-203ENST00000439316 OR5T1Q8NG75 326 aa13.55□□□□□ -0.24
CLCNKA-203ENST00000439316 BTF3L4Q96K17 158 aa13.55□□□□□ -0.24
CLCNKA-203ENST00000439316 MGST2Q99735 147 aa13.55□□□□□ -0.24
CLCNKA-203ENST00000439316 DERL1Q9BUN8 251 aa13.55□□□□□ -0.24
CLCNKA-203ENST00000439316 GGTLC1Q9BX51 225 aa13.55□□□□□ -0.24
CLCNKA-203ENST00000439316 IGHV1-18A0A0C4DH31 117 aa13.54□□□□□ -0.24
CLCNKA-203ENST00000439316 STAG3L2P0CL84 134 aa13.54□□□□□ -0.24
CLCNKA-203ENST00000439316 STAG3L3P0CL85 134 aa13.54□□□□□ -0.24
CLCNKA-203ENST00000439316 ERVK-16P61578 105 aa13.54□□□□□ -0.24
CLCNKA-203ENST00000439316 RELBQ01201 579 aa13.54□□□□□ -0.24
CLCNKA-203ENST00000439316 IFI27L2Q9H2X8 130 aa13.54□□□□□ -0.24
CLCNKA-203ENST00000439316 MS4A5Q9H3V2 200 aa13.54□□□□□ -0.24
CLCNKA-203ENST00000439316 PATZ1Q9HBE1 687 aaKnown RBP13.54□□□□□ -0.24
CLCNKA-203ENST00000439316 PXMP4Q9Y6I8 212 aa13.54□□□□□ -0.24
CLCNKA-203ENST00000439316 F2RL2O00254 374 aa13.54□□□□□ -0.24
CLCNKA-203ENST00000439316 MGST3O14880 152 aa13.54□□□□□ -0.24
CLCNKA-203ENST00000439316 CRYABP02511 175 aaKnown RBP13.54□□□□□ -0.24
CLCNKA-203ENST00000439316 C1QTNF9P0C862 333 aa13.54□□□□□ -0.24
CLCNKA-203ENST00000439316 ARL14EPLP0DKL9 152 aa13.54□□□□□ -0.24
CLCNKA-203ENST00000439316 LOXL3P58215 753 aa13.54□□□□□ -0.24
CLCNKA-203ENST00000439316 RPL39P5Q59GN2 51 aa13.54□□□□□ -0.24
CLCNKA-203ENST00000439316 ZNF114Q8NC26 417 aa13.54□□□□□ -0.24
CLCNKA-203ENST00000439316 HEYLQ9NQ87 328 aaPredicted RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms