RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 IGHV4OR15-8A0A075B7B6 117 aa11.75□□□□□ -0.53
LIMS3-201ENST00000437679 A0A087WW49 117 aa11.75□□□□□ -0.53
LIMS3-201ENST00000437679 RGS5O15539 181 aa11.75□□□□□ -0.53
LIMS3-201ENST00000437679 RAMP3O60896 148 aa11.75□□□□□ -0.53
LIMS3-201ENST00000437679 TPPPO94811 219 aa11.75□□□□□ -0.53
LIMS3-201ENST00000437679 BRI3O95415 125 aa11.75□□□□□ -0.53
LIMS3-201ENST00000437679 HPRT1P00492 218 aa11.75□□□□□ -0.53
LIMS3-201ENST00000437679 OR9G9P0C7N8 305 aa11.75□□□□□ -0.53
LIMS3-201ENST00000437679 MAS1LP35410 378 aa11.75□□□□□ -0.53
LIMS3-201ENST00000437679 TMBIM6P55061 237 aa11.75□□□□□ -0.53
LIMS3-201ENST00000437679 RNASE12Q5GAN4 147 aaKnown RBP11.75□□□□□ -0.53
LIMS3-201ENST00000437679 SSX9Q7RTT3 188 aa11.75□□□□□ -0.53
LIMS3-201ENST00000437679 CMTM1Q8IZ96 169 aa11.75□□□□□ -0.53
LIMS3-201ENST00000437679 C15orf40Q8WUR7 153 aa11.75□□□□□ -0.53
LIMS3-201ENST00000437679 OVOL1O14753 267 aa11.74□□□□□ -0.53
LIMS3-201ENST00000437679 S100GP29377 79 aa11.74□□□□□ -0.53
LIMS3-201ENST00000437679 RPL27AP46776 148 aaKnown RBP11.74□□□□□ -0.53
LIMS3-201ENST00000437679 TAS2R31P59538 309 aa11.74□□□□□ -0.53
LIMS3-201ENST00000437679 DGCR2P98153 550 aa11.74□□□□□ -0.53
LIMS3-201ENST00000437679 C10orf55Q5SWW7 151 aa11.74□□□□□ -0.53
LIMS3-201ENST00000437679 LPCAT3Q6P1A2 487 aa11.74□□□□□ -0.53
LIMS3-201ENST00000437679 SLC25A42Q86VD7 318 aa11.74□□□□□ -0.53
LIMS3-201ENST00000437679 ADAD2Q8NCV1 583 aaKnown RBP11.74□□□□□ -0.53
LIMS3-201ENST00000437679 OR4A5Q8NH83 315 aa11.74□□□□□ -0.53
LIMS3-201ENST00000437679 DCUN1D4Q92564 292 aa11.74□□□□□ -0.53
LIMS3-201ENST00000437679 FXYD6Q9H0Q3 95 aa11.74□□□□□ -0.53
LIMS3-201ENST00000437679 PLEKHA2Q9HB19 425 aa11.74□□□□□ -0.53
LIMS3-201ENST00000437679 HRASLSQ9HDD0 168 aa11.74□□□□□ -0.53
LIMS3-201ENST00000437679 BET1LQ9NYM9 111 aa11.74□□□□□ -0.53
LIMS3-201ENST00000437679 GPR31O00270 319 aa11.73□□□□□ -0.53
LIMS3-201ENST00000437679 PGLYRP1O75594 196 aaPredicted RBP11.73□□□□□ -0.53
LIMS3-201ENST00000437679 RLN1P04808 185 aa11.73□□□□□ -0.53
LIMS3-201ENST00000437679 NQO2P16083 231 aa11.73□□□□□ -0.53
LIMS3-201ENST00000437679 SLURP1P55000 103 aa11.73□□□□□ -0.53
LIMS3-201ENST00000437679 RPL8P62917 257 aaKnown RBP11.73□□□□□ -0.53
LIMS3-201ENST00000437679 OR4A47Q6IF82 309 aa11.73□□□□□ -0.53
LIMS3-201ENST00000437679 USMG5Q96IX5 58 aa11.73□□□□□ -0.53
LIMS3-201ENST00000437679 FYTTD1Q96QD9 318 aaKnown RBP11.73□□□□□ -0.53
LIMS3-201ENST00000437679 RANGRFQ9HD47 186 aaPredicted RBP11.73□□□□□ -0.53
LIMS3-201ENST00000437679 CCDC59Q9P031 241 aaKnown RBP11.73□□□□□ -0.53
LIMS3-201ENST00000437679 WI2-2373I1.2A0A1W2PRP0 233 aa11.72□□□□□ -0.53
LIMS3-201ENST00000437679 DPPA5A6NC42 116 aa11.72□□□□□ -0.53
LIMS3-201ENST00000437679 K7EIL1 84 aa11.72□□□□□ -0.53
LIMS3-201ENST00000437679 IFNA6P05013 189 aa11.72□□□□□ -0.53
LIMS3-201ENST00000437679 HLA-GP17693 338 aa11.72□□□□□ -0.53
LIMS3-201ENST00000437679 F2RP25116 425 aa11.72□□□□□ -0.53
LIMS3-201ENST00000437679 INSL3P51460 131 aa11.72□□□□□ -0.53
LIMS3-201ENST00000437679 ERVK-16P61578 105 aa11.72□□□□□ -0.53
LIMS3-201ENST00000437679 POU2AF1Q16633 256 aa11.72□□□□□ -0.53
LIMS3-201ENST00000437679 VAX1Q5SQQ9 334 aa11.72□□□□□ -0.53
LIMS3-201ENST00000437679 LAX1Q8IWV1 398 aa11.72□□□□□ -0.53
LIMS3-201ENST00000437679 TTC9CQ8N5M4 171 aa11.72□□□□□ -0.53
LIMS3-201ENST00000437679 DMBX1Q8NFW5 382 aa11.72□□□□□ -0.53
LIMS3-201ENST00000437679 OR52I2Q8NH67 350 aa11.72□□□□□ -0.53
LIMS3-201ENST00000437679 DYNC2LI1Q8TCX1 351 aa11.72□□□□□ -0.53
LIMS3-201ENST00000437679 FCAMRQ8WWV6 532 aa11.72□□□□□ -0.53
LIMS3-201ENST00000437679 DLX4Q92988 240 aaPredicted RBP11.72□□□□□ -0.53
LIMS3-201ENST00000437679 ABHD1Q96SE0 405 aa11.72□□□□□ -0.53
LIMS3-201ENST00000437679 MIXL1Q9H2W2 232 aa11.72□□□□□ -0.53
LIMS3-201ENST00000437679 COMMD9Q9P000 198 aa11.72□□□□□ -0.53
LIMS3-201ENST00000437679 KLK11Q9UBX7 282 aa11.72□□□□□ -0.53
LIMS3-201ENST00000437679 ANKRD34BA5PLL1 514 aa11.71□□□□□ -0.53
LIMS3-201ENST00000437679 HMX3A6NHT5 357 aa11.71□□□□□ -0.53
LIMS3-201ENST00000437679 M0QYG6 137 aa11.71□□□□□ -0.53
LIMS3-201ENST00000437679 CTDSP2O14595 271 aa11.71□□□□□ -0.53
LIMS3-201ENST00000437679 S1PR2O95136 353 aa11.71□□□□□ -0.53
LIMS3-201ENST00000437679 IL6RP08887 468 aaPredicted RBP11.71□□□□□ -0.53
LIMS3-201ENST00000437679 ZNF735P0CB33 412 aa11.71□□□□□ -0.53
LIMS3-201ENST00000437679 ZP3P21754 424 aa11.71□□□□□ -0.53
LIMS3-201ENST00000437679 RHOGP84095 191 aa11.71□□□□□ -0.53
LIMS3-201ENST00000437679 PHLDA2Q53GA4 152 aa11.71□□□□□ -0.53
LIMS3-201ENST00000437679 RNASE10Q5GAN6 216 aaKnown RBP11.71□□□□□ -0.53
LIMS3-201ENST00000437679 DEFB121Q5J5C9 76 aa11.71□□□□□ -0.53
LIMS3-201ENST00000437679 DGCR14Q96DF8 476 aaKnown RBP11.71□□□□□ -0.53
LIMS3-201ENST00000437679 TMEM140Q9NV12 185 aa11.71□□□□□ -0.53
LIMS3-201ENST00000437679 MTFP1Q9UDX5 166 aa11.71□□□□□ -0.53
LIMS3-201ENST00000437679 SCOCQ9UIL1 159 aa11.71□□□□□ -0.53
LIMS3-201ENST00000437679 ZNF257Q9Y2Q1 563 aa11.71□□□□□ -0.53
LIMS3-201ENST00000437679 SORL1Q92673 2214 aa11.71□□□□□ -0.54
LIMS3-201ENST00000437679 FAM223BA6NKX1 122 aa11.7□□□□□ -0.54
LIMS3-201ENST00000437679 TEX22C9J3V5 150 aa11.7□□□□□ -0.54
LIMS3-201ENST00000437679 H3BMQ9 156 aa11.7□□□□□ -0.54
LIMS3-201ENST00000437679 UPK2O00526 184 aa11.7□□□□□ -0.54
LIMS3-201ENST00000437679 PRH1P02810 166 aa11.7□□□□□ -0.54
LIMS3-201ENST00000437679 TBPP20226 339 aa11.7□□□□□ -0.54
LIMS3-201ENST00000437679 ECI1P42126 302 aa11.7□□□□□ -0.54
LIMS3-201ENST00000437679 LPAR6P43657 344 aa11.7□□□□□ -0.54
LIMS3-201ENST00000437679 UCP3P55916 312 aa11.7□□□□□ -0.54
LIMS3-201ENST00000437679 MRPS10P82664 201 aaKnown RBP11.7□□□□□ -0.54
LIMS3-201ENST00000437679 DEFA5Q01523 94 aa11.7□□□□□ -0.54
LIMS3-201ENST00000437679 ATP5G2Q06055 141 aa11.7□□□□□ -0.54
LIMS3-201ENST00000437679 ZNF343Q6P1L6 599 aa11.7□□□□□ -0.54
LIMS3-201ENST00000437679 ZNF429Q86V71 674 aa11.7□□□□□ -0.54
LIMS3-201ENST00000437679 FAM223AQ8IWN6 122 aa11.7□□□□□ -0.54
LIMS3-201ENST00000437679 SLC38A6Q8IZM9 456 aa11.7□□□□□ -0.54
LIMS3-201ENST00000437679 ISOC1Q96CN7 298 aa11.7□□□□□ -0.54
LIMS3-201ENST00000437679 DIRAS2Q96HU8 199 aa11.7□□□□□ -0.54
LIMS3-201ENST00000437679 RSRP1Q9BUV0 290 aa11.7□□□□□ -0.54
LIMS3-201ENST00000437679 AKIP1Q9NQ31 210 aa11.7□□□□□ -0.54
LIMS3-201ENST00000437679 SLC2A9Q9NRM0 540 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms