RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 C11orf44Q8N8P7 122 aa9.69□□□□□ -0.86
PTPRF-208ENST00000437607 LRTM2Q8N967 370 aa9.69□□□□□ -0.86
PTPRF-208ENST00000437607 OR5AN1Q8NGI8 311 aa9.69□□□□□ -0.86
PTPRF-208ENST00000437607 MALSU1Q96EH3 234 aa9.69□□□□□ -0.86
PTPRF-208ENST00000437607 HARBI1Q96MB7 349 aa9.69□□□□□ -0.86
PTPRF-208ENST00000437607 SSX3Q99909 188 aa9.69□□□□□ -0.86
PTPRF-208ENST00000437607 FAM25EA8MYX2 175 aa9.68□□□□□ -0.86
PTPRF-208ENST00000437607 CCSO14618 274 aa9.68□□□□□ -0.86
PTPRF-208ENST00000437607 SHOXO15266 292 aa9.68□□□□□ -0.86
PTPRF-208ENST00000437607 HOXB5P09067 269 aa9.68□□□□□ -0.86
PTPRF-208ENST00000437607 BRS3P32247 399 aa9.68□□□□□ -0.86
PTPRF-208ENST00000437607 LINC00205P59089 165 aa9.68□□□□□ -0.86
PTPRF-208ENST00000437607 FCN2Q15485 313 aa9.68□□□□□ -0.86
PTPRF-208ENST00000437607 LDLRAD2Q5SZI1 272 aa9.68□□□□□ -0.86
PTPRF-208ENST00000437607 THOC7Q6I9Y2 204 aaKnown RBP9.68□□□□□ -0.86
PTPRF-208ENST00000437607 KLHDC1Q8N7A1 406 aa9.68□□□□□ -0.86
PTPRF-208ENST00000437607 OR4C13Q8NGP0 309 aa9.68□□□□□ -0.86
PTPRF-208ENST00000437607 OR5M8Q8NGP6 311 aa9.68□□□□□ -0.86
PTPRF-208ENST00000437607 LHFPL5Q8TAF8 219 aa9.68□□□□□ -0.86
PTPRF-208ENST00000437607 R3HDM4Q96D70 268 aa9.68□□□□□ -0.86
PTPRF-208ENST00000437607 RRNAD1Q96FB5 475 aaKnown RBP9.68□□□□□ -0.86
PTPRF-208ENST00000437607 TMEM56Q96MV1 263 aa9.68□□□□□ -0.86
PTPRF-208ENST00000437607 SPIN2AQ99865 258 aa9.68□□□□□ -0.86
PTPRF-208ENST00000437607 SPIN2BQ9BPZ2 258 aa9.68□□□□□ -0.86
PTPRF-208ENST00000437607 PDCD10Q9BUL8 212 aa9.68□□□□□ -0.86
PTPRF-208ENST00000437607 MEGF9Q9H1U4 602 aa9.68□□□□□ -0.86
PTPRF-208ENST00000437607 PLEKHA2Q9HB19 425 aa9.68□□□□□ -0.86
PTPRF-208ENST00000437607 RAB18Q9NP72 206 aa9.68□□□□□ -0.86
PTPRF-208ENST00000437607 TMEM56-RWDD3S4R434 201 aa9.68□□□□□ -0.86
PTPRF-208ENST00000437607 C5orf51A6NDU8 294 aa9.67□□□□□ -0.86
PTPRF-208ENST00000437607 MARCH11A6NNE9 402 aa9.67□□□□□ -0.86
PTPRF-208ENST00000437607 CHST1O43916 411 aa9.67□□□□□ -0.86
PTPRF-208ENST00000437607 ADAP1O75689 374 aa9.67□□□□□ -0.86
PTPRF-208ENST00000437607 CDS2O95674 445 aa9.67□□□□□ -0.86
PTPRF-208ENST00000437607 HRASP01112 189 aa9.67□□□□□ -0.86
PTPRF-208ENST00000437607 SULT1A3P0DMM9 295 aa9.67□□□□□ -0.86
PTPRF-208ENST00000437607 SULT1A4P0DMN0 295 aa9.67□□□□□ -0.86
PTPRF-208ENST00000437607 NQO2P16083 231 aa9.67□□□□□ -0.86
PTPRF-208ENST00000437607 VDAC1P21796 283 aa9.67□□□□□ -0.86
PTPRF-208ENST00000437607 CD1BP29016 333 aa9.67□□□□□ -0.86
PTPRF-208ENST00000437607 HES1Q14469 280 aa9.67□□□□□ -0.86
PTPRF-208ENST00000437607 ZNF585BQ52M93 769 aa9.67□□□□□ -0.86
PTPRF-208ENST00000437607 GSG1LQ6UXU4 331 aa9.67□□□□□ -0.86
PTPRF-208ENST00000437607 AKAP14Q86UN6 197 aa9.67□□□□□ -0.86
PTPRF-208ENST00000437607 FAM219AQ8IW50 185 aa9.67□□□□□ -0.86
PTPRF-208ENST00000437607 SELENOHQ8IZQ5 122 aaKnown RBP9.67□□□□□ -0.86
PTPRF-208ENST00000437607 DMBX1Q8NFW5 382 aa9.67□□□□□ -0.86
PTPRF-208ENST00000437607 OSR1Q8TAX0 266 aaPredicted RBP9.67□□□□□ -0.86
PTPRF-208ENST00000437607 PIFOQ8TCI5 191 aa9.67□□□□□ -0.86
PTPRF-208ENST00000437607 FLYWCH2Q96CP2 140 aaKnown RBP9.67□□□□□ -0.86
PTPRF-208ENST00000437607 AIFM2Q9BRQ8 373 aa9.67□□□□□ -0.86
PTPRF-208ENST00000437607 TMED3Q9Y3Q3 217 aa9.67□□□□□ -0.86
PTPRF-208ENST00000437607 HMX3A6NHT5 357 aa9.66□□□□□ -0.86
PTPRF-208ENST00000437607 DBX1A6NMT0 343 aa9.66□□□□□ -0.86
PTPRF-208ENST00000437607 IGKV1D-33P01593 117 aa9.66□□□□□ -0.86
PTPRF-208ENST00000437607 IGKV1-33P01594 117 aa9.66□□□□□ -0.86
PTPRF-208ENST00000437607 IGKV1-39P01597 117 aa9.66□□□□□ -0.86
PTPRF-208ENST00000437607 IGKV1-16P04430 117 aa9.66□□□□□ -0.86
PTPRF-208ENST00000437607 IGKV1D-39P04432 117 aa9.66□□□□□ -0.86
PTPRF-208ENST00000437607 G6PCP35575 357 aa9.66□□□□□ -0.86
PTPRF-208ENST00000437607 RPS16P62249 146 aaKnown RBP9.66□□□□□ -0.86
PTPRF-208ENST00000437607 LRRC75BQ2VPJ9 315 aa9.66□□□□□ -0.86
PTPRF-208ENST00000437607 VMA21Q3ZAQ7 101 aa9.66□□□□□ -0.86
PTPRF-208ENST00000437607 TMEM177Q53S58 311 aa9.66□□□□□ -0.86
PTPRF-208ENST00000437607 OXLD1Q5BKU9 147 aa9.66□□□□□ -0.86
PTPRF-208ENST00000437607 GGNBP1Q5YKI7 109 aa9.66□□□□□ -0.86
PTPRF-208ENST00000437607 SSX9Q7RTT3 188 aa9.66□□□□□ -0.86
PTPRF-208ENST00000437607 H2BFWTQ7Z2G1 175 aa9.66□□□□□ -0.86
PTPRF-208ENST00000437607 LYZL2Q7Z4W2 148 aa9.66□□□□□ -0.86
PTPRF-208ENST00000437607 DYNAPQ8N1N2 210 aa9.66□□□□□ -0.86
PTPRF-208ENST00000437607 TSNAXQ99598 290 aaKnown RBP9.66□□□□□ -0.86
PTPRF-208ENST00000437607 C13orf42A0A1B0GVH6 325 aa9.65□□□□□ -0.86
PTPRF-208ENST00000437607 SPDEFO95238 335 aa9.65□□□□□ -0.86
PTPRF-208ENST00000437607 MOSP00540 346 aa9.65□□□□□ -0.86
PTPRF-208ENST00000437607 KRASP01116 189 aa9.65□□□□□ -0.86
PTPRF-208ENST00000437607 SNRNP70P08621 437 aaKnown RBP9.65□□□□□ -0.86
PTPRF-208ENST00000437607 BRWD1-AS2P59051 145 aa9.65□□□□□ -0.86
PTPRF-208ENST00000437607 HABP2Q14520 560 aaPredicted RBP9.65□□□□□ -0.86
PTPRF-208ENST00000437607 MMDQ15546 238 aa9.65□□□□□ -0.86
PTPRF-208ENST00000437607 IAH1Q2TAA2 248 aaPredicted RBP9.65□□□□□ -0.86
PTPRF-208ENST00000437607 OR11H7Q8NGC8 314 aa9.65□□□□□ -0.86
PTPRF-208ENST00000437607 OR2T10Q8NGZ9 312 aa9.65□□□□□ -0.86
PTPRF-208ENST00000437607 VSTM2AQ8TAG5 236 aa9.65□□□□□ -0.86
PTPRF-208ENST00000437607 ASB13Q8WXK3 278 aa9.65□□□□□ -0.86
PTPRF-208ENST00000437607 LSM10Q969L4 123 aaKnown RBP9.65□□□□□ -0.86
PTPRF-208ENST00000437607 RANBP3Q9H6Z4 567 aaPredicted RBP9.65□□□□□ -0.86
PTPRF-208ENST00000437607 TMEM140Q9NV12 185 aa9.65□□□□□ -0.86
PTPRF-208ENST00000437607 KIAA1456Q9P272 454 aa9.65□□□□□ -0.86
PTPRF-208ENST00000437607 ADARB2-AS1A8MUL3 147 aa9.64□□□□□ -0.87
PTPRF-208ENST00000437607 PFDN1O60925 122 aa9.64□□□□□ -0.87
PTPRF-208ENST00000437607 RBMXL2O75526 392 aaKnown RBP9.64□□□□□ -0.87
PTPRF-208ENST00000437607 SIX6O95475 246 aa9.64□□□□□ -0.87
PTPRF-208ENST00000437607 IGKV1-5P01602 117 aa9.64□□□□□ -0.87
PTPRF-208ENST00000437607 GIPP09681 153 aaPredicted RBP9.64□□□□□ -0.87
PTPRF-208ENST00000437607 SAA1P0DJI8 122 aaPredicted RBP9.64□□□□□ -0.87
PTPRF-208ENST00000437607 TMEM11P17152 192 aa9.64□□□□□ -0.87
PTPRF-208ENST00000437607 CD83Q01151 205 aa9.64□□□□□ -0.87
PTPRF-208ENST00000437607 PLGLAQ15195 96 aa9.64□□□□□ -0.87
PTPRF-208ENST00000437607 AANATQ16613 207 aa9.64□□□□□ -0.87
PTPRF-208ENST00000437607 NMSQ5H8A3 153 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms