RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 HRASLSQ9HDD0 168 aa14.55□□□□□ -0.08
SHH-203ENST00000435425 NDUFA13Q9P0J0 144 aa14.55□□□□□ -0.08
SHH-203ENST00000435425 FBN3Q75N90 2809 aa14.55□□□□□ -0.08
SHH-203ENST00000435425 DISC1C4P0D8 188 aa14.54□□□□□ -0.08
SHH-203ENST00000435425 MPPED1O15442 326 aa14.54□□□□□ -0.08
SHH-203ENST00000435425 AKAIN1P0CW23 69 aa14.54□□□□□ -0.08
SHH-203ENST00000435425 F2RP25116 425 aa14.54□□□□□ -0.08
SHH-203ENST00000435425 CD40LGP29965 261 aa14.54□□□□□ -0.08
SHH-203ENST00000435425 FOXB2Q5VYV0 432 aa14.54□□□□□ -0.08
SHH-203ENST00000435425 OR4A47Q6IF82 309 aa14.54□□□□□ -0.08
SHH-203ENST00000435425 LHFPL1Q86WI0 220 aa14.54□□□□□ -0.08
SHH-203ENST00000435425 ZNF491Q8N8L2 437 aa14.54□□□□□ -0.08
SHH-203ENST00000435425 DMBX1Q8NFW5 382 aa14.54□□□□□ -0.08
SHH-203ENST00000435425 OR4C16Q8NGL9 310 aa14.54□□□□□ -0.08
SHH-203ENST00000435425 OR5M8Q8NGP6 311 aa14.54□□□□□ -0.08
SHH-203ENST00000435425 TMEM167AQ8TBQ9 72 aa14.54□□□□□ -0.08
SHH-203ENST00000435425 CD300LFQ8TDQ1 290 aa14.54□□□□□ -0.08
SHH-203ENST00000435425 AIFM2Q9BRQ8 373 aa14.54□□□□□ -0.08
SHH-203ENST00000435425 GNB4Q9HAV0 340 aa14.54□□□□□ -0.08
SHH-203ENST00000435425 VWFP04275 2813 aa14.54□□□□□ -0.08
SHH-203ENST00000435425 ZNF735P0CB33 412 aa14.53□□□□□ -0.08
SHH-203ENST00000435425 NQO2P16083 231 aa14.53□□□□□ -0.08
SHH-203ENST00000435425 RAB25P57735 213 aa14.53□□□□□ -0.08
SHH-203ENST00000435425 TPPP2P59282 170 aa14.53□□□□□ -0.08
SHH-203ENST00000435425 TAS2R31P59538 309 aa14.53□□□□□ -0.08
SHH-203ENST00000435425 KIAA0141Q14154 515 aaPredicted RBP14.53□□□□□ -0.08
SHH-203ENST00000435425 MEF2DQ14814 521 aa14.53□□□□□ -0.08
SHH-203ENST00000435425 ASPHD1Q5U4P2 390 aa14.53□□□□□ -0.08
SHH-203ENST00000435425 ETV3LQ6ZN32 361 aa14.53□□□□□ -0.08
SHH-203ENST00000435425 TERB2Q8NHR7 220 aa14.53□□□□□ -0.08
SHH-203ENST00000435425 THAP7Q9BT49 309 aaPredicted RBP14.53□□□□□ -0.08
SHH-203ENST00000435425 PLEKHA2Q9HB19 425 aa14.53□□□□□ -0.08
SHH-203ENST00000435425 V9GYH0 126 aa14.53□□□□□ -0.08
SHH-203ENST00000435425 TNCP24821 2201 aa14.53□□□□□ -0.08
SHH-203ENST00000435425 ANKRD20A5PA0PJZ0 165 aa14.52□□□□□ -0.09
SHH-203ENST00000435425 TRGV3P03979 118 aa14.52□□□□□ -0.09
SHH-203ENST00000435425 MYOD1P15172 320 aa14.52□□□□□ -0.09
SHH-203ENST00000435425 MYCNOSP40205 109 aa14.52□□□□□ -0.09
SHH-203ENST00000435425 ERVK-16P61578 105 aa14.52□□□□□ -0.09
SHH-203ENST00000435425 MARCH1Q8TCQ1 289 aa14.52□□□□□ -0.09
SHH-203ENST00000435425 RAX2Q96IS3 184 aa14.52□□□□□ -0.09
SHH-203ENST00000435425 UBE2E2Q96LR5 201 aa14.52□□□□□ -0.09
SHH-203ENST00000435425 FYTTD1Q96QD9 318 aaKnown RBP14.52□□□□□ -0.09
SHH-203ENST00000435425 SLC2A9Q9NRM0 540 aa14.52□□□□□ -0.09
SHH-203ENST00000435425 COA4Q9NYJ1 87 aa14.52□□□□□ -0.09
SHH-203ENST00000435425 VSIG4Q9Y279 399 aa14.52□□□□□ -0.09
SHH-203ENST00000435425 NBEAL1Q6ZS30 2694 aa14.52□□□□□ -0.09
SHH-203ENST00000435425 TRAV3A0A0B4J244 114 aa14.51□□□□□ -0.09
SHH-203ENST00000435425 HMX3A6NHT5 357 aa14.51□□□□□ -0.09
SHH-203ENST00000435425 G3V4G9 280 aa14.51□□□□□ -0.09
SHH-203ENST00000435425 CCL24O00175 119 aa14.51□□□□□ -0.09
SHH-203ENST00000435425 SLC6A1P30531 599 aa14.51□□□□□ -0.09
SHH-203ENST00000435425 RPL27AP46776 148 aaKnown RBP14.51□□□□□ -0.09
SHH-203ENST00000435425 PIGPP57054 158 aa14.51□□□□□ -0.09
SHH-203ENST00000435425 ZNF585BQ52M93 769 aa14.51□□□□□ -0.09
SHH-203ENST00000435425 CCDC190Q86UF4 302 aa14.51□□□□□ -0.09
SHH-203ENST00000435425 MRPL41Q8IXM3 137 aaKnown RBP14.51□□□□□ -0.09
SHH-203ENST00000435425 OR13C8Q8NGS7 320 aa14.51□□□□□ -0.09
SHH-203ENST00000435425 ZFAND1Q8TCF1 268 aa14.51□□□□□ -0.09
SHH-203ENST00000435425 MYOZ3Q8TDC0 251 aa14.51□□□□□ -0.09
SHH-203ENST00000435425 C4orf3Q8WVX3 66 aa14.51□□□□□ -0.09
SHH-203ENST00000435425 TMEM68Q96MH6 324 aa14.51□□□□□ -0.09
SHH-203ENST00000435425 TMEM140Q9NV12 185 aa14.51□□□□□ -0.09
SHH-203ENST00000435425 BET1LQ9NYM9 111 aa14.51□□□□□ -0.09
SHH-203ENST00000435425 COMMD9Q9P000 198 aa14.51□□□□□ -0.09
SHH-203ENST00000435425 UPK2O00526 184 aa14.5□□□□□ -0.09
SHH-203ENST00000435425 KRASP01116 189 aa14.5□□□□□ -0.09
SHH-203ENST00000435425 IGHV3-11P01762 117 aa14.5□□□□□ -0.09
SHH-203ENST00000435425 IGLL1P15814 213 aa14.5□□□□□ -0.09
SHH-203ENST00000435425 G6PCP35575 357 aa14.5□□□□□ -0.09
SHH-203ENST00000435425 RPL8P62917 257 aaKnown RBP14.5□□□□□ -0.09
SHH-203ENST00000435425 DEFA5Q01523 94 aa14.5□□□□□ -0.09
SHH-203ENST00000435425 ZNF79Q15937 498 aa14.5□□□□□ -0.09
SHH-203ENST00000435425 OXLD1Q5BKU9 147 aa14.5□□□□□ -0.09
SHH-203ENST00000435425 SPANXN2Q5MJ10 180 aa14.5□□□□□ -0.09
SHH-203ENST00000435425 Q8N402 240 aa14.5□□□□□ -0.09
SHH-203ENST00000435425 LINC00482Q8N8I6 264 aa14.5□□□□□ -0.09
SHH-203ENST00000435425 OR51S1Q8NGJ8 323 aa14.5□□□□□ -0.09
SHH-203ENST00000435425 OR6Q1Q8NGQ2 317 aa14.5□□□□□ -0.09
SHH-203ENST00000435425 OR4A5Q8NH83 315 aa14.5□□□□□ -0.09
SHH-203ENST00000435425 SPIN2AQ99865 258 aa14.5□□□□□ -0.09
SHH-203ENST00000435425 SPIN2BQ9BPZ2 258 aa14.5□□□□□ -0.09
SHH-203ENST00000435425 ALX4Q9H161 411 aaPredicted RBP14.5□□□□□ -0.09
SHH-203ENST00000435425 MCUBQ9NWR8 336 aa14.5□□□□□ -0.09
SHH-203ENST00000435425 CMYA5Q8N3K9 4069 aa14.5□□□□□ -0.09
SHH-203ENST00000435425 E7EUB6 86 aa14.49□□□□□ -0.09
SHH-203ENST00000435425 HLA-GP17693 338 aa14.49□□□□□ -0.09
SHH-203ENST00000435425 MAS1LP35410 378 aa14.49□□□□□ -0.09
SHH-203ENST00000435425 POU2AF1Q16633 256 aa14.49□□□□□ -0.09
SHH-203ENST00000435425 OR11H1Q8NG94 326 aa14.49□□□□□ -0.09
SHH-203ENST00000435425 MRGPRFQ96AM1 343 aa14.49□□□□□ -0.09
SHH-203ENST00000435425 ZNF486Q96H40 463 aaPredicted RBP14.49□□□□□ -0.09
SHH-203ENST00000435425 P2RX4Q99571 388 aa14.49□□□□□ -0.09
SHH-203ENST00000435425 SLA2Q9H6Q3 261 aa14.49□□□□□ -0.09
SHH-203ENST00000435425 COPZ2Q9P299 210 aa14.49□□□□□ -0.09
SHH-203ENST00000435425 MGAM2Q2M2H8 2515 aa14.48□□□□□ -0.09
SHH-203ENST00000435425 MARCH11A6NNE9 402 aa14.48□□□□□ -0.09
SHH-203ENST00000435425 PRH1P02810 166 aa14.48□□□□□ -0.09
SHH-203ENST00000435425 IL6RP08887 468 aaPredicted RBP14.48□□□□□ -0.09
SHH-203ENST00000435425 OR9G9P0C7N8 305 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms