RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 KCNAB3O43448 404 aa9.75□□□□□ -0.85
USP40-205ENST00000430158 CA2P00918 260 aa9.75□□□□□ -0.85
USP40-205ENST00000430158 HRASP01112 189 aa9.75□□□□□ -0.85
USP40-205ENST00000430158 P0C879 139 aa9.75□□□□□ -0.85
USP40-205ENST00000430158 NQO2P16083 231 aa9.75□□□□□ -0.85
USP40-205ENST00000430158 PPIFP30405 207 aaKnown RBP9.75□□□□□ -0.85
USP40-205ENST00000430158 CCR6P51684 374 aa9.75□□□□□ -0.85
USP40-205ENST00000430158 SUPT4H1P63272 117 aaKnown RBP9.75□□□□□ -0.85
USP40-205ENST00000430158 ZNF846Q147U1 533 aa9.75□□□□□ -0.85
USP40-205ENST00000430158 VMA21Q3ZAQ7 101 aa9.75□□□□□ -0.85
USP40-205ENST00000430158 XP32Q5T750 250 aa9.75□□□□□ -0.85
USP40-205ENST00000430158 SEC22AQ96IW7 307 aa9.75□□□□□ -0.85
USP40-205ENST00000430158 CLCC1Q96S66 551 aa9.75□□□□□ -0.85
USP40-205ENST00000430158 SLC25A21Q9BQT8 299 aaPredicted RBP9.75□□□□□ -0.85
USP40-205ENST00000430158 C7orf50Q9BRJ6 194 aaKnown RBP9.75□□□□□ -0.85
USP40-205ENST00000430158 WDR12Q9GZL7 423 aaKnown RBP9.75□□□□□ -0.85
USP40-205ENST00000430158 ZNF430Q9H8G1 570 aaPredicted RBP9.75□□□□□ -0.85
USP40-205ENST00000430158 BET1LQ9NYM9 111 aa9.75□□□□□ -0.85
USP40-205ENST00000430158 TBC1D24Q9ULP9 559 aa9.75□□□□□ -0.85
USP40-205ENST00000430158 ADARB2-AS1A8MUL3 147 aa9.74□□□□□ -0.85
USP40-205ENST00000430158 G3V318 75 aa9.74□□□□□ -0.85
USP40-205ENST00000430158 KBTBD11O94819 623 aa9.74□□□□□ -0.85
USP40-205ENST00000430158 OR2A4O95047 310 aa9.74□□□□□ -0.85
USP40-205ENST00000430158 NDUFB6O95139 128 aa9.74□□□□□ -0.85
USP40-205ENST00000430158 UCP1P25874 307 aa9.74□□□□□ -0.85
USP40-205ENST00000430158 CD83Q01151 205 aa9.74□□□□□ -0.85
USP40-205ENST00000430158 DHODHQ02127 395 aa9.74□□□□□ -0.85
USP40-205ENST00000430158 ASPHD1Q5U4P2 390 aa9.74□□□□□ -0.85
USP40-205ENST00000430158 HIST2H2BDQ6DRA6 164 aa9.74□□□□□ -0.85
USP40-205ENST00000430158 OR4A47Q6IF82 309 aa9.74□□□□□ -0.85
USP40-205ENST00000430158 C3orf56Q8N813 242 aa9.74□□□□□ -0.85
USP40-205ENST00000430158 MINDY2Q8NBR6 621 aa9.74□□□□□ -0.85
USP40-205ENST00000430158 GLYATL2Q8WU03 294 aa9.74□□□□□ -0.85
USP40-205ENST00000430158 CHPT1Q8WUD6 406 aa9.74□□□□□ -0.85
USP40-205ENST00000430158 GALNT14Q96FL9 552 aa9.74□□□□□ -0.85
USP40-205ENST00000430158 OR2A7Q96R45 310 aa9.74□□□□□ -0.85
USP40-205ENST00000430158 NAA60Q9H7X0 242 aa9.74□□□□□ -0.85
USP40-205ENST00000430158 COPZ2Q9P299 210 aa9.74□□□□□ -0.85
USP40-205ENST00000430158 C3orf85A0A1B0GTC6 90 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 LINC00854A0A1B0GVQ3 168 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 CGB1A6NKQ9 187 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 E7EUB6 86 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 UPK2O00526 184 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 LYRM1O43325 122 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 UPK1BO75841 260 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 CDS2O95674 445 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 IGKV1-5P01602 117 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 FGF2P09038 288 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 CD28P10747 220 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 S100GP29377 79 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 KIAA0141Q14154 515 aaPredicted RBP9.73□□□□□ -0.85
USP40-205ENST00000430158 FXYD3Q14802 87 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 SP6Q3SY56 376 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 SHISA2Q6UWI4 295 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 ZNF329Q86UD4 541 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 FOXRED2Q8IWF2 684 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 RNF152Q8N8N0 203 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 CCDC71LQ8N9Z2 235 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 POC5Q8NA72 575 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 OR5AU1Q8NGC0 362 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 OR4A5Q8NH83 315 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 SGMS2Q8NHU3 365 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 LHFPL5Q8TAF8 219 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 R3HDM4Q96D70 268 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 SCGB3A2Q96PL1 93 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 TMEM222Q9H0R3 208 aa9.73□□□□□ -0.85
USP40-205ENST00000430158 C14orf166Q9Y224 244 aaKnown RBP9.73□□□□□ -0.85
USP40-205ENST00000430158 TEX13DA0A0J9YY54 714 aaPredicted RBP9.72□□□□□ -0.85
USP40-205ENST00000430158 PSMB11A5LHX3 300 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 MARCH11A6NNE9 402 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 SOX15O60248 233 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 B3GALNT1O75752 331 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 IGLV1-40P01703 118 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 IGHG4P01861 327 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 OR5AC1P0C628 307 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 MYOD1P15172 320 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 RPA2P15927 270 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 SLC6A1P30531 599 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 G6PCP35575 357 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 ASAH1Q13510 395 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 TMEM187Q14656 261 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 PLGLAQ15195 96 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 RBMS2Q15434 407 aaKnown RBP9.72□□□□□ -0.85
USP40-205ENST00000430158 SSX9Q7RTT3 188 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 CENPVQ7Z7K6 275 aaPredicted RBP9.72□□□□□ -0.85
USP40-205ENST00000430158 MMD2Q8IY49 270 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 VSTM2AQ8TAG5 236 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 MYOZ3Q8TDC0 251 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 ARPC1AQ92747 370 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 TMEM56Q96MV1 263 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 AIFM2Q9BRQ8 373 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 FAM103A1Q9BTL3 118 aaKnown RBP9.72□□□□□ -0.85
USP40-205ENST00000430158 PARP11Q9NR21 331 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 TMEM140Q9NV12 185 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 FLVCR2Q9UPI3 526 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 WSB1Q9Y6I7 421 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 TMEM56-RWDD3S4R434 201 aa9.72□□□□□ -0.85
USP40-205ENST00000430158 TRAV41A0A0B4J266 112 aa9.71□□□□□ -0.86
USP40-205ENST00000430158 DBX1A6NMT0 343 aa9.71□□□□□ -0.86
USP40-205ENST00000430158 TEX22C9J3V5 150 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms