RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 FGF12P61328 243 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 BSPH1Q075Z2 132 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 RHEBQ15382 184 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 SP6Q3SY56 376 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 LCE1CQ5T751 118 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 LCE1BQ5T7P3 118 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 WDR59Q6PJI9 974 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 CYB561D1Q8N8Q1 229 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 OR13C8Q8NGS7 320 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 MRPL30Q8TCC3 161 aaKnown RBP3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 MBD3L1Q8WWY6 194 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 OR5P3Q8WZ94 311 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 RBPMSQ93062 196 aaKnown RBP3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 TSC22D3Q99576 134 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 CCDC32Q9BV29 185 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 WDR61Q9GZS3 305 aaKnown RBP3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 CHST6Q9GZX3 395 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 PBOV1Q9GZY1 135 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 GABARAPL1Q9H0R8 117 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 FBXL12Q9NXK8 326 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 TVP23BQ9NYZ1 205 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 PHLDA3Q9Y5J5 127 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 CPDO75976 1380 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 KMT2EQ8IZD2 1858 aa3.2□□□□□ -1.9
CCDC88A-206ENST00000430086 AHDC1Q5TGY3 1603 aaPredicted RBP3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 TRAV9-1A0A075B6T8 112 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 EFCAB10A6NFE3 127 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 LST1O00453 97 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 G6PCP35575 357 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 SERPINB10P48595 397 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 SRP9P49458 86 aaKnown RBP3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 KRTAP10-1P60331 282 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 SURF2Q15527 256 aaPredicted RBP3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 CCDC58Q4VC31 144 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 LINC00483Q53H64 154 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 TNFAIP8L3Q5GJ75 292 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 Q6ZR03 302 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 ZNF101Q8IZC7 436 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 MIR7-3HGQ8N6C7 128 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 OR4K13Q8NH42 304 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 DNAJC30Q96LL9 226 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 SERPINI1Q99574 410 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 B9D2Q9BPU9 175 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 TSSK6Q9BXA6 273 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 RSPO3Q9BXY4 272 aaPredicted RBP3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 C20orf27Q9GZN8 174 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 TMEM222Q9H0R3 208 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 TMEM138Q9NPI0 162 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 MED29Q9NX70 200 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 GSKIPQ9P0R6 139 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 SLC23A2Q9UGH3 650 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 OR52A1Q9UKL2 312 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 ARHGEF10O15013 1369 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 PEG3Q9GZU2 1588 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 SSH2Q76I76 1423 aa3.19□□□□□ -1.9
CCDC88A-206ENST00000430086 TRBV19A0A075B6N1 114 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 A0A0J9YY10 115 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 A0A1B0GX78 115 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 DPRXA6NFQ7 191 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 J3QRK9 145 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 UBE2L6O14933 153 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 ARPC5O15511 151 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 SRP19P09132 144 aaKnown RBP3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 SMIM17P0DL12 118 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 SMIM10L2AP0DMW4 78 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 SMIM10L2BP0DMW5 78 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 NTF3P20783 257 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 GLRXP35754 106 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 TBPL1P62380 186 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 HBA1P69905 142 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 LYRM7Q5U5X0 104 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 AMTNQ6UX39 209 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 ZNF695Q8IW36 515 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 OSR2Q8N2R0 312 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 ZNF664Q8N3J9 261 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 OR11G2Q8NGC1 345 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 UBALD1Q8TB05 177 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 ZNF675Q8TD23 568 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 SLC7A6Q92536 515 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 HIST1H2BAQ96A08 127 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 LYSMD1Q96S90 227 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 EFCAB11Q9BUY7 163 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 PLA2G12AQ9BZM1 189 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 LAMTOR3Q9UHA4 124 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 RPUSD1Q9UJJ7 312 aaKnown RBP3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 NUP160Q12769 1436 aa3.18□□□□□ -1.9
CCDC88A-206ENST00000430086 ROBO3Q96MS0 1386 aa3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 IGKV1-12A0A0C4DH73 117 aa3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 A0A1W2PRE2 83 aa3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 SIGLEC16A6NMB1 481 aa3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 RIIAD1A6NNX1 92 aa3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 A8MUN3 132 aa3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 PIAS1O75925 651 aa3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 OR2J2O76002 312 aa3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 IFNA10P01566 189 aa3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 IGKV1D-12P01611 117 aa3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 RAB13P51153 203 aa3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 EMP1P54849 157 aa3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 FKBP1AP62942 108 aaKnown RBP3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 CCDC153Q494R4 210 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms