RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 RBM7Q9Y580 266 aaKnown RBP12.33□□□□□ -0.44
CHCHD3-202ENST00000423635 MUC4Q99102 2169 aa12.33□□□□□ -0.44
CHCHD3-202ENST00000423635 A0A1B0GW64 132 aa12.32□□□□□ -0.44
CHCHD3-202ENST00000423635 DPPA5A6NC42 116 aa12.32□□□□□ -0.44
CHCHD3-202ENST00000423635 DHFRP00374 187 aa12.32□□□□□ -0.44
CHCHD3-202ENST00000423635 HIST1H1BP16401 226 aaKnown RBP12.32□□□□□ -0.44
CHCHD3-202ENST00000423635 NANOGP1Q8N7R0 232 aa12.32□□□□□ -0.44
CHCHD3-202ENST00000423635 APLNQ9ULZ1 77 aa12.32□□□□□ -0.44
CHCHD3-202ENST00000423635 KCNK7Q9Y2U2 307 aa12.32□□□□□ -0.44
CHCHD3-202ENST00000423635 UFC1Q9Y3C8 167 aa12.32□□□□□ -0.44
CHCHD3-202ENST00000423635 MYL12BO14950 172 aa12.31□□□□□ -0.44
CHCHD3-202ENST00000423635 FCGR3AP08637 254 aa12.31□□□□□ -0.44
CHCHD3-202ENST00000423635 MYOD1P15172 320 aa12.31□□□□□ -0.44
CHCHD3-202ENST00000423635 RPL35AP18077 110 aaKnown RBP12.31□□□□□ -0.44
CHCHD3-202ENST00000423635 FCGR2BP31994 310 aaPredicted RBP12.31□□□□□ -0.44
CHCHD3-202ENST00000423635 MAS1LP35410 378 aa12.31□□□□□ -0.44
CHCHD3-202ENST00000423635 RPL27AP46776 148 aaKnown RBP12.31□□□□□ -0.44
CHCHD3-202ENST00000423635 P2RY14Q15391 338 aa12.31□□□□□ -0.44
CHCHD3-202ENST00000423635 HSD17B12Q53GQ0 312 aa12.31□□□□□ -0.44
CHCHD3-202ENST00000423635 OR56B1Q8NGI3 324 aa12.31□□□□□ -0.44
CHCHD3-202ENST00000423635 CXorf58Q96LI9 332 aa12.31□□□□□ -0.44
CHCHD3-202ENST00000423635 OR2A7Q96R45 310 aa12.31□□□□□ -0.44
CHCHD3-202ENST00000423635 RARRES2Q99969 163 aa12.31□□□□□ -0.44
CHCHD3-202ENST00000423635 DCUN1D5Q9BTE7 237 aa12.31□□□□□ -0.44
CHCHD3-202ENST00000423635 C11orf68Q9H3H3 251 aaKnown RBP12.31□□□□□ -0.44
CHCHD3-202ENST00000423635 IGLV11-55A0A075B6I3 123 aa12.3□□□□□ -0.44
CHCHD3-202ENST00000423635 SLC17A2O00624 439 aa12.3□□□□□ -0.44
CHCHD3-202ENST00000423635 FCGR3BO75015 233 aa12.3□□□□□ -0.44
CHCHD3-202ENST00000423635 UCHL1P09936 223 aa12.3□□□□□ -0.44
CHCHD3-202ENST00000423635 AREGP15514 252 aa12.3□□□□□ -0.44
CHCHD3-202ENST00000423635 ARFRP1Q13795 201 aa12.3□□□□□ -0.44
CHCHD3-202ENST00000423635 H1FOOQ8IZA3 346 aaPredicted RBP12.3□□□□□ -0.44
CHCHD3-202ENST00000423635 PUSL1Q8N0Z8 303 aaKnown RBP12.3□□□□□ -0.44
CHCHD3-202ENST00000423635 GVQW1Q8N7I0 195 aa12.3□□□□□ -0.44
CHCHD3-202ENST00000423635 VSTM2AQ8TAG5 236 aa12.3□□□□□ -0.44
CHCHD3-202ENST00000423635 TMEM167AQ8TBQ9 72 aa12.3□□□□□ -0.44
CHCHD3-202ENST00000423635 GFI1Q99684 422 aa12.3□□□□□ -0.44
CHCHD3-202ENST00000423635 CENPOQ9BU64 300 aa12.3□□□□□ -0.44
CHCHD3-202ENST00000423635 ZNF436Q9C0F3 470 aaPredicted RBP12.3□□□□□ -0.44
CHCHD3-202ENST00000423635 CSTL1Q9H114 145 aa12.3□□□□□ -0.44
CHCHD3-202ENST00000423635 FBXL17Q9UF56 701 aa12.3□□□□□ -0.44
CHCHD3-202ENST00000423635 MFSD2BA6NFX1 497 aa12.29□□□□□ -0.44
CHCHD3-202ENST00000423635 KBTBD11O94819 623 aa12.29□□□□□ -0.44
CHCHD3-202ENST00000423635 S1PR2O95136 353 aa12.29□□□□□ -0.44
CHCHD3-202ENST00000423635 MRPS15P82914 257 aaKnown RBP12.29□□□□□ -0.44
CHCHD3-202ENST00000423635 MED22Q15528 200 aa12.29□□□□□ -0.44
CHCHD3-202ENST00000423635 LAMTOR1Q6IAA8 161 aa12.29□□□□□ -0.44
CHCHD3-202ENST00000423635 C10orf67Q8IYJ2 551 aa12.29□□□□□ -0.44
CHCHD3-202ENST00000423635 VKORC1L1Q8N0U8 176 aa12.29□□□□□ -0.44
CHCHD3-202ENST00000423635 GINS4Q9BRT9 223 aa12.29□□□□□ -0.44
CHCHD3-202ENST00000423635 PSORS1C1Q9UIG5 152 aa12.29□□□□□ -0.44
CHCHD3-202ENST00000423635 PRELID3BQ9Y3B1 194 aa12.29□□□□□ -0.44
CHCHD3-202ENST00000423635 IRF3Q14653 427 aa12.28□□□□□ -0.44
CHCHD3-202ENST00000423635 SSX1Q16384 188 aa12.28□□□□□ -0.44
CHCHD3-202ENST00000423635 ZNF502Q8TBZ5 544 aa12.28□□□□□ -0.44
CHCHD3-202ENST00000423635 PLGRKTQ9HBL7 147 aa12.28□□□□□ -0.44
CHCHD3-202ENST00000423635 OR4C46A6NHA9 309 aa12.27□□□□□ -0.45
CHCHD3-202ENST00000423635 MPTX1A8MV57 137 aa12.27□□□□□ -0.45
CHCHD3-202ENST00000423635 DEFA4P12838 97 aa12.27□□□□□ -0.45
CHCHD3-202ENST00000423635 ADMP35318 185 aa12.27□□□□□ -0.45
CHCHD3-202ENST00000423635 RPL30P62888 115 aaKnown RBP12.27□□□□□ -0.45
CHCHD3-202ENST00000423635 PKD1P98161 4303 aa12.27□□□□□ -0.45
CHCHD3-202ENST00000423635 C2orf76Q3KRA6 126 aa12.27□□□□□ -0.45
CHCHD3-202ENST00000423635 LAIR2Q6ISS4 152 aa12.27□□□□□ -0.45
CHCHD3-202ENST00000423635 PLET1Q6UQ28 207 aa12.27□□□□□ -0.45
CHCHD3-202ENST00000423635 Q6ZS49 121 aa12.27□□□□□ -0.45
CHCHD3-202ENST00000423635 PQLC1Q8N2U9 271 aa12.27□□□□□ -0.45
CHCHD3-202ENST00000423635 ZNF645Q8N7E2 425 aa12.27□□□□□ -0.45
CHCHD3-202ENST00000423635 TMEM190Q8WZ59 177 aa12.27□□□□□ -0.45
CHCHD3-202ENST00000423635 C6orf62Q9GZU0 229 aaPredicted RBP12.27□□□□□ -0.45
CHCHD3-202ENST00000423635 S100A14Q9HCY8 104 aa12.27□□□□□ -0.45
CHCHD3-202ENST00000423635 PLCXD1Q9NUJ7 323 aa12.27□□□□□ -0.45
CHCHD3-202ENST00000423635 MRPS7Q9Y2R9 242 aaKnown RBP12.27□□□□□ -0.45
CHCHD3-202ENST00000423635 IGHV3-35A0A0C4DH35 117 aa12.26□□□□□ -0.45
CHCHD3-202ENST00000423635 DENRO43583 198 aaKnown RBP12.26□□□□□ -0.45
CHCHD3-202ENST00000423635 PTBP1P26599 531 aaKnown RBP eCLIP12.26□□□□□ -0.451e-6■■■■□ 25.8
CHCHD3-202ENST00000423635 GPR183P32249 361 aa12.26□□□□□ -0.45
CHCHD3-202ENST00000423635 PSMD7P51665 324 aa12.26□□□□□ -0.45
CHCHD3-202ENST00000423635 MFAP2P55001 183 aa12.26□□□□□ -0.45
CHCHD3-202ENST00000423635 RAB11BQ15907 218 aa12.26□□□□□ -0.45
CHCHD3-202ENST00000423635 KCTD9Q7L273 389 aa12.26□□□□□ -0.45
CHCHD3-202ENST00000423635 OR11H2Q8NH07 326 aa12.26□□□□□ -0.45
CHCHD3-202ENST00000423635 OR5B3Q8NH48 314 aa12.26□□□□□ -0.45
CHCHD3-202ENST00000423635 MAFIPQ8WZ33 124 aa12.26□□□□□ -0.45
CHCHD3-202ENST00000423635 FAM3DQ96BQ1 224 aa12.26□□□□□ -0.45
CHCHD3-202ENST00000423635 RAB3CQ96E17 227 aa12.26□□□□□ -0.45
CHCHD3-202ENST00000423635 DAZ1Q9NQZ3 744 aaKnown RBP12.26□□□□□ -0.45
CHCHD3-202ENST00000423635 AK6Q9Y3D8 172 aaKnown RBP12.26□□□□□ -0.45
CHCHD3-202ENST00000423635 CGB1A6NKQ9 187 aa12.25□□□□□ -0.45
CHCHD3-202ENST00000423635 IGLL5B9A064 214 aa12.25□□□□□ -0.45
CHCHD3-202ENST00000423635 C11orf94C9JXX5 98 aa12.25□□□□□ -0.45
CHCHD3-202ENST00000423635 IGLV2-14P01704 120 aa12.25□□□□□ -0.45
CHCHD3-202ENST00000423635 BRWD1-AS2P59051 145 aa12.25□□□□□ -0.45
CHCHD3-202ENST00000423635 AHSA2Q719I0 299 aa12.25□□□□□ -0.45
CHCHD3-202ENST00000423635 CD300LFQ8TDQ1 290 aa12.25□□□□□ -0.45
CHCHD3-202ENST00000423635 FKBP14Q9NWM8 211 aa12.25□□□□□ -0.45
CHCHD3-202ENST00000423635 RAB22AQ9UL26 194 aa12.25□□□□□ -0.45
CHCHD3-202ENST00000423635 RBMX2Q9Y388 322 aaKnown RBP12.25□□□□□ -0.45
CHCHD3-202ENST00000423635 TGOLN2O43493 480 aa12.24□□□□□ -0.45
CHCHD3-202ENST00000423635 SLC22A5O76082 557 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms