RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 NEIL1Q96FI4 390 aaPredicted RBP8.14□□□□□ -1.11
SS18-203ENST00000415083 CBLN4Q9NTU7 201 aa8.14□□□□□ -1.11
SS18-203ENST00000415083 DKK4Q9UBT3 224 aa8.14□□□□□ -1.11
SS18-203ENST00000415083 IFNA1P01562 189 aa8.14□□□□□ -1.11
SS18-203ENST00000415083 IGHG3P01860 377 aa8.14□□□□□ -1.11
SS18-203ENST00000415083 CGB3P0DN86 165 aa8.14□□□□□ -1.11
SS18-203ENST00000415083 CGB7P0DN87 165 aa8.14□□□□□ -1.11
SS18-203ENST00000415083 CD1BP29016 333 aa8.14□□□□□ -1.11
SS18-203ENST00000415083 CDC34P49427 236 aaPredicted RBP8.14□□□□□ -1.11
SS18-203ENST00000415083 PAX5Q02548 391 aa8.14□□□□□ -1.11
SS18-203ENST00000415083 MSMO1Q15800 293 aa8.14□□□□□ -1.11
SS18-203ENST00000415083 ARSJQ5FYB0 599 aaPredicted RBP8.14□□□□□ -1.11
SS18-203ENST00000415083 FAM214BQ7L5A3 538 aa8.14□□□□□ -1.11
SS18-203ENST00000415083 OR5B12Q96R08 314 aa8.14□□□□□ -1.11
SS18-203ENST00000415083 TRIB1Q96RU8 372 aa8.14□□□□□ -1.11
SS18-203ENST00000415083 GGTLC1Q9BX51 225 aa8.14□□□□□ -1.11
SS18-203ENST00000415083 FAM234AQ9H0X4 552 aa8.14□□□□□ -1.11
SS18-203ENST00000415083 KCNIP1Q9NZI2 227 aa8.14□□□□□ -1.11
SS18-203ENST00000415083 LSM4Q9Y4Z0 139 aaKnown RBP8.14□□□□□ -1.11
SS18-203ENST00000415083 SP9P0CG40 484 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 GCH1P30793 250 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 CR1LQ2VPA4 569 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 HES3Q5TGS1 186 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 MIC13Q5XKP0 118 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 INO80CQ6PI98 192 aaPredicted RBP8.13□□□□□ -1.11
SS18-203ENST00000415083 CXXC4Q9H2H0 198 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 ABI3Q9P2A4 366 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 IGHV2OR16-5A0A0B4J2B6 119 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 A0A0U1RQK1 487 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 SCO2A0A1W2PP80 73 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 ZNF891A8MT65 544 aaPredicted RBP8.13□□□□□ -1.11
SS18-203ENST00000415083 TGOLN2O43493 480 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 FCGR3BO75015 233 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 TNFSF13O75888 250 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 SCGB1D1O95968 90 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 ARL14EPLP0DKL9 152 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 HNF1AP20823 631 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 TMEM249Q2WGJ8 235 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 FAM201AQ5SY85 155 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 FAM78BQ5VT40 261 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 C22orf34Q6ZV56 151 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 GCSAMQ8N6F7 178 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 OR2T10Q8NGZ9 312 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 FAM122AQ96E09 287 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 SEPSECSQ9HD40 501 aaKnown RBP8.13□□□□□ -1.11
SS18-203ENST00000415083 TNCP24821 2201 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 NKX2-8O15522 239 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 CGAP01215 116 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 UBE2NP61088 152 aaKnown RBP8.13□□□□□ -1.11
SS18-203ENST00000415083 HTD2P86397 168 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 EDDM3AQ14507 147 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 TEX38Q6PEX7 206 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 ZNRF1Q8ND25 227 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 ELOVL5Q9NYP7 299 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 ZNRD1Q9P1U0 126 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 RNF114Q9Y508 228 aa8.13□□□□□ -1.11
SS18-203ENST00000415083 ARFGEF3Q5TH69 2177 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 PIGBOS1A0A0B4J2F0 54 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 VENTXO95231 258 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 CD46P15529 392 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 PRDX2P32119 198 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 TMPRSS3P57727 454 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 C17orf58Q2M2W7 97 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 MOB3BQ86TA1 216 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 GBGT1Q8N5D6 347 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 RAB1CQ92928 201 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 PXMP4Q9Y6I8 212 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 F2Z2F3 143 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 STAG3L2P0CL84 134 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 STAG3L3P0CL85 134 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 CST9LP1Q5W188 147 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 FDCSPQ8NFU4 85 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 OCC1Q8TAD7 63 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 LRRC29Q8WV35 223 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 ANAPC16Q96DE5 110 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 TAAR6Q96RI8 345 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 HSD17B10Q99714 261 aaKnown RBP8.12□□□□□ -1.11
SS18-203ENST00000415083 YPEL1O60688 119 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 RBMXL2O75526 392 aaKnown RBP8.12□□□□□ -1.11
SS18-203ENST00000415083 MBP02144 154 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 SRP14P37108 136 aaKnown RBP8.12□□□□□ -1.11
SS18-203ENST00000415083 CATR1Q13166 79 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 YPEL2Q96QA6 119 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 C2orf88Q9BSF0 95 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 NDUFAF3Q9BU61 184 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 OPN3Q9H1Y3 402 aaPredicted RBP8.12□□□□□ -1.11
SS18-203ENST00000415083 DUSP13Q9UII6 198 aa8.12□□□□□ -1.11
SS18-203ENST00000415083 FCN3O75636 299 aa8.11□□□□□ -1.11
SS18-203ENST00000415083 ADMP35318 185 aa8.11□□□□□ -1.11
SS18-203ENST00000415083 TDRG1Q3Y452 100 aa8.11□□□□□ -1.11
SS18-203ENST00000415083 MBNL2Q5VZF2 373 aaKnown RBP8.11□□□□□ -1.11
SS18-203ENST00000415083 CNEP1R1Q8N9A8 125 aa8.11□□□□□ -1.11
SS18-203ENST00000415083 ZNF503Q96F45 646 aa8.11□□□□□ -1.11
SS18-203ENST00000415083 SNHG12Q9BXW3 62 aa8.11□□□□□ -1.11
SS18-203ENST00000415083 LRBAP50851 2863 aa8.11□□□□□ -1.11
SS18-203ENST00000415083 IGKV1OR2-108A0A075B7D4 117 aa8.11□□□□□ -1.11
SS18-203ENST00000415083 SRRM5B3KS81 715 aa8.11□□□□□ -1.11
SS18-203ENST00000415083 MMP23AO75900 390 aa8.11□□□□□ -1.11
SS18-203ENST00000415083 OPRK1P41145 380 aa8.11□□□□□ -1.11
SS18-203ENST00000415083 THBS3P49746 956 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms