RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 IGKV3-7A0A075B6H7 116 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 RPS10P46783 165 aaKnown RBP7.56□□□□□ -1.2
LIG4-202ENST00000405925 TDGF1P3P51864 188 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 KIAA0141Q14154 515 aaPredicted RBP7.56□□□□□ -1.2
LIG4-202ENST00000405925 LYPD2Q6UXB3 125 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 OR4F17Q8NGA8 305 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 OR1L4Q8NGR5 311 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 OR4X1Q8NH49 305 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 RSG1Q9BU20 258 aa7.56□□□□□ -1.2
LIG4-202ENST00000405925 C1orf196B1AJZ1 125 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 GOSR1O95249 250 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 F12P00748 615 aaPredicted RBP7.55□□□□□ -1.2
LIG4-202ENST00000405925 FBP1P09467 338 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 AKR1C3P42330 323 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 UBE2L3P68036 154 aaKnown RBP7.55□□□□□ -1.2
LIG4-202ENST00000405925 PJVKQ0ZLH3 352 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 FXYD3Q14802 87 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 C3orf36Q3SXR2 165 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 HEPN1Q6WQI6 88 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 ASCL4Q6XD76 172 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 ZNF788Q6ZQV5 615 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 SSX3Q99909 188 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 NPVFQ9HCQ7 196 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 A6NNC1 897 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 TRIM77I1YAP6 450 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 MMP9P14780 707 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 ZNF324BQ6AW86 544 aaPredicted RBP7.55□□□□□ -1.2
LIG4-202ENST00000405925 PRR27Q6MZM9 219 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 TEX29Q8N6K0 151 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 Q8WTZ3 238 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 GAFA1Q96PS6 74 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 PRRC2CQ9Y520 2896 aaKnown RBP7.55□□□□□ -1.2
LIG4-202ENST00000405925 IGLV3-9A0A075B6K5 115 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 H7BYZ3 331 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 J3QKU1 62 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 OR10J1P30954 320 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 RND2P52198 227 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 TMEM200BQ69YZ2 307 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 OR4A47Q6IF82 309 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 KCNIP4Q6PIL6 250 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 OR8I2Q8N0Y5 310 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 OR4P4Q8NGL7 312 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 OR4C12Q96R67 309 aa7.55□□□□□ -1.2
LIG4-202ENST00000405925 LRRK2Q5S007 2527 aa7.54□□□□□ -1.2
LIG4-202ENST00000405925 PITX3O75364 302 aa7.54□□□□□ -1.2
LIG4-202ENST00000405925 C1QL1O75973 258 aa7.54□□□□□ -1.2
LIG4-202ENST00000405925 SNRPCP09234 159 aaKnown RBP7.54□□□□□ -1.2
LIG4-202ENST00000405925 LHFPL1Q86WI0 220 aa7.54□□□□□ -1.2
LIG4-202ENST00000405925 PDPNQ86YL7 162 aa7.54□□□□□ -1.2
LIG4-202ENST00000405925 CXorf58Q96LI9 332 aa7.54□□□□□ -1.2
LIG4-202ENST00000405925 LYRM2Q9NU23 88 aaPredicted RBP7.54□□□□□ -1.2
LIG4-202ENST00000405925 TRAV40A0A0B4J280 105 aa7.54□□□□□ -1.2
LIG4-202ENST00000405925 RNASEK-C17orf49H0YIS7 233 aa7.54□□□□□ -1.2
LIG4-202ENST00000405925 CLEC12BQ2HXU8 276 aa7.54□□□□□ -1.2
LIG4-202ENST00000405925 MS4A10Q96PG2 267 aa7.54□□□□□ -1.2
LIG4-202ENST00000405925 P2RX4Q99571 388 aa7.54□□□□□ -1.2
LIG4-202ENST00000405925 AAMDCQ9H7C9 122 aa7.54□□□□□ -1.2
LIG4-202ENST00000405925 RNF24Q9Y225 148 aa7.54□□□□□ -1.2
LIG4-202ENST00000405925 RAMP3O60896 148 aa7.54□□□□□ -1.2
LIG4-202ENST00000405925 IGLV3-1P01715 115 aa7.54□□□□□ -1.2
LIG4-202ENST00000405925 HKR1P10072 659 aa7.54□□□□□ -1.2
LIG4-202ENST00000405925 CABLES2Q9BTV7 478 aa7.54□□□□□ -1.2
LIG4-202ENST00000405925 TRANK1O15050 2925 aa7.54□□□□□ -1.2
LIG4-202ENST00000405925 SEC11BP0C7V7 166 aa7.53□□□□□ -1.2
LIG4-202ENST00000405925 ANOS1P23352 680 aa7.53□□□□□ -1.2
LIG4-202ENST00000405925 SAT2Q96F10 170 aaPredicted RBP7.53□□□□□ -1.2
LIG4-202ENST00000405925 MMP26Q9NRE1 261 aa7.53□□□□□ -1.2
LIG4-202ENST00000405925 TLN2Q9Y4G6 2542 aa7.53□□□□□ -1.2
LIG4-202ENST00000405925 MSGN1A6NI15 193 aa7.53□□□□□ -1.2
LIG4-202ENST00000405925 DUTP33316 252 aaKnown RBP7.53□□□□□ -1.2
LIG4-202ENST00000405925 CNN1P51911 297 aaKnown RBP7.53□□□□□ -1.2
LIG4-202ENST00000405925 PSG5Q15238 335 aa7.53□□□□□ -1.2
LIG4-202ENST00000405925 COMMD1Q8N668 190 aa7.53□□□□□ -1.2
LIG4-202ENST00000405925 C17orf50Q8WW18 174 aa7.53□□□□□ -1.2
LIG4-202ENST00000405925 RBM14Q96PK6 669 aaKnown RBP7.53□□□□□ -1.2
LIG4-202ENST00000405925 AQP10Q96PS8 301 aa7.53□□□□□ -1.2
LIG4-202ENST00000405925 DMRTA2Q96SC8 542 aa7.53□□□□□ -1.2
LIG4-202ENST00000405925 NDFIP1Q9BT67 221 aa7.53□□□□□ -1.2
LIG4-202ENST00000405925 TECRQ9NZ01 308 aaKnown RBP7.53□□□□□ -1.2
LIG4-202ENST00000405925 ABCA2Q9BZC7 2435 aa7.53□□□□□ -1.2
LIG4-202ENST00000405925 IGHV3-35A0A0C4DH35 117 aa7.53□□□□□ -1.2
LIG4-202ENST00000405925 CORTO00230 105 aa7.53□□□□□ -1.2
LIG4-202ENST00000405925 ZNF737O75373 536 aa7.53□□□□□ -1.2
LIG4-202ENST00000405925 SLC25A5P05141 298 aaKnown RBP7.53□□□□□ -1.2
LIG4-202ENST00000405925 ADORA2A-AS1P86434 159 aa7.53□□□□□ -1.2
LIG4-202ENST00000405925 KLRD1Q13241 179 aa7.53□□□□□ -1.2
LIG4-202ENST00000405925 OR5B3Q8NH48 314 aa7.53□□□□□ -1.2
LIG4-202ENST00000405925 TVP23CQ96ET8 276 aa7.53□□□□□ -1.2
LIG4-202ENST00000405925 GRAMD2BQ96HH9 432 aa7.53□□□□□ -1.2
LIG4-202ENST00000405925 PFDN5Q99471 154 aa7.53□□□□□ -1.2
LIG4-202ENST00000405925 ARFGEF3Q5TH69 2177 aa7.53□□□□□ -1.2
LIG4-202ENST00000405925 HIVEP3Q5T1R4 2406 aa7.53□□□□□ -1.2
LIG4-202ENST00000405925 LINC00869P0C866 280 aa7.52□□□□□ -1.2
LIG4-202ENST00000405925 IGHV1-8P0DP01 117 aa7.52□□□□□ -1.2
LIG4-202ENST00000405925 SPP1P10451 314 aa7.52□□□□□ -1.2
LIG4-202ENST00000405925 AANATQ16613 207 aa7.52□□□□□ -1.2
LIG4-202ENST00000405925 FAM216AQ8WUB2 273 aa7.52□□□□□ -1.2
LIG4-202ENST00000405925 PXMP4Q9Y6I8 212 aa7.52□□□□□ -1.2
LIG4-202ENST00000405925 NPIPB11E5RHQ5 1161 aa7.52□□□□□ -1.21
LIG4-202ENST00000405925 TIMM23O14925 209 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms