RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 SMIM21Q3B7S5 101 aa10.52□□□□□ -0.72
SHMT1-205ENST00000395684 RPL39P5Q59GN2 51 aa10.52□□□□□ -0.72
SHMT1-205ENST00000395684 TEX38Q6PEX7 206 aa10.52□□□□□ -0.72
SHMT1-205ENST00000395684 FAM214BQ7L5A3 538 aa10.52□□□□□ -0.72
SHMT1-205ENST00000395684 OR4A16Q8NH70 328 aa10.52□□□□□ -0.72
SHMT1-205ENST00000395684 GGTLC1Q9BX51 225 aa10.52□□□□□ -0.72
SHMT1-205ENST00000395684 HEYLQ9NQ87 328 aaPredicted RBP10.52□□□□□ -0.72
SHMT1-205ENST00000395684 CLCF1Q9UBD9 225 aa10.52□□□□□ -0.72
SHMT1-205ENST00000395684 TP53TG5Q9Y2B4 290 aa10.52□□□□□ -0.72
SHMT1-205ENST00000395684 SCO2A0A1W2PP80 73 aa10.52□□□□□ -0.73
SHMT1-205ENST00000395684 MPDU1O75352 247 aa10.52□□□□□ -0.73
SHMT1-205ENST00000395684 PRDX2P32119 198 aa10.52□□□□□ -0.73
SHMT1-205ENST00000395684 ZNF134P52741 427 aa10.52□□□□□ -0.73
SHMT1-205ENST00000395684 IQCJQ1A5X6 159 aa10.52□□□□□ -0.73
SHMT1-205ENST00000395684 MORN2Q502X0 79 aa10.52□□□□□ -0.73
SHMT1-205ENST00000395684 PDLIM3Q53GG5 364 aaPredicted RBP10.52□□□□□ -0.73
SHMT1-205ENST00000395684 OCC1Q8TAD7 63 aa10.52□□□□□ -0.73
SHMT1-205ENST00000395684 ASPMQ8IZT6 3477 aa10.52□□□□□ -0.73
SHMT1-205ENST00000395684 TMPRSS3P57727 454 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 FAM90A1Q86YD7 464 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 TGIF2LXQ8IUE1 241 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 CNEP1R1Q8N9A8 125 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 TRIB1Q96RU8 372 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 FKBP11Q9NYL4 201 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 GNG12Q9UBI6 72 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 ZFHX4Q86UP3 3567 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 M0R1X1 148 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 EREGO14944 169 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 KITLGP21583 273 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 RELBQ01201 579 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 UTF1Q5T230 341 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 C1orf229Q6ZS94 237 aaPredicted RBP10.51□□□□□ -0.73
SHMT1-205ENST00000395684 LRRC29Q8WV35 223 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 SSMEM1Q8WWF3 244 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 YTHDF2Q9Y5A9 579 aaKnown RBP10.51□□□□□ -0.73
SHMT1-205ENST00000395684 MDFIC2A0A1B0GVS7 189 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 FAM90A9PA6NNJ1 464 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 SCGB1D1O95968 90 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 CXorf1O96002 111 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 CECR9P0C854 216 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 ADMP35318 185 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 TIMP3P35625 211 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 THBS3P49746 956 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 RAB4BP61018 213 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 RPP30P78346 268 aaKnown RBP10.51□□□□□ -0.73
SHMT1-205ENST00000395684 VWA1Q6PCB0 445 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 OR52E5Q8NH55 327 aa10.51□□□□□ -0.73
SHMT1-205ENST00000395684 SEPSECSQ9HD40 501 aaKnown RBP10.51□□□□□ -0.73
SHMT1-205ENST00000395684 TECTAO75443 2155 aa10.5□□□□□ -0.73
SHMT1-205ENST00000395684 HCFC1P51610 2035 aa10.5□□□□□ -0.73
SHMT1-205ENST00000395684 IGKV1D-17A0A075B6S4 117 aa10.5□□□□□ -0.73
SHMT1-205ENST00000395684 SOX15O60248 233 aa10.5□□□□□ -0.73
SHMT1-205ENST00000395684 CD59P13987 128 aa10.5□□□□□ -0.73
SHMT1-205ENST00000395684 YPEL3P61236 119 aaPredicted RBP10.5□□□□□ -0.73
SHMT1-205ENST00000395684 GUSBP1Q15486 140 aa10.5□□□□□ -0.73
SHMT1-205ENST00000395684 LSM4Q9Y4Z0 139 aaKnown RBP10.5□□□□□ -0.73
SHMT1-205ENST00000395684 GRIFINA4D1Z8 144 aa10.5□□□□□ -0.73
SHMT1-205ENST00000395684 KIR2DL2P43627 348 aaPredicted RBP10.5□□□□□ -0.73
SHMT1-205ENST00000395684 LOXL3P58215 753 aa10.5□□□□□ -0.73
SHMT1-205ENST00000395684 ZNF718Q3SXZ3 478 aa10.5□□□□□ -0.73
SHMT1-205ENST00000395684 SPATA31B1PQ5VZV4 182 aa10.5□□□□□ -0.73
SHMT1-205ENST00000395684 DHRS13Q6UX07 377 aa10.5□□□□□ -0.73
SHMT1-205ENST00000395684 BTF3L4Q96K17 158 aa10.5□□□□□ -0.73
SHMT1-205ENST00000395684 TXNDC17Q9BRA2 123 aa10.5□□□□□ -0.73
SHMT1-205ENST00000395684 TMEM140Q9NV12 185 aa10.5□□□□□ -0.73
SHMT1-205ENST00000395684 DUSP13Q9UII6 198 aa10.5□□□□□ -0.73
SHMT1-205ENST00000395684 POLR3KQ9Y2Y1 108 aaPredicted RBP10.5□□□□□ -0.73
SHMT1-205ENST00000395684 K7EN84 100 aa10.49□□□□□ -0.73
SHMT1-205ENST00000395684 CD33P20138 364 aa10.49□□□□□ -0.73
SHMT1-205ENST00000395684 HLA-DRB5Q30154 266 aa10.49□□□□□ -0.73
SHMT1-205ENST00000395684 ARSJQ5FYB0 599 aaPredicted RBP10.49□□□□□ -0.73
SHMT1-205ENST00000395684 TRAT1Q6PIZ9 186 aa10.49□□□□□ -0.73
SHMT1-205ENST00000395684 TMEM178AQ8NBL3 297 aa10.49□□□□□ -0.73
SHMT1-205ENST00000395684 OR10G8Q8NGN5 311 aa10.49□□□□□ -0.73
SHMT1-205ENST00000395684 IFI27L2Q9H2X8 130 aa10.49□□□□□ -0.73
SHMT1-205ENST00000395684 TP53TG3Q9ULZ0 132 aa10.49□□□□□ -0.73
SHMT1-205ENST00000395684 YPEL1O60688 119 aa10.49□□□□□ -0.73
SHMT1-205ENST00000395684 FOXH1O75593 365 aa10.49□□□□□ -0.73
SHMT1-205ENST00000395684 HOXC12P31275 282 aa10.49□□□□□ -0.73
SHMT1-205ENST00000395684 TNFSF10P50591 281 aa10.49□□□□□ -0.73
SHMT1-205ENST00000395684 RPL31P62899 125 aaKnown RBP10.49□□□□□ -0.73
SHMT1-205ENST00000395684 MS4A10Q96PG2 267 aa10.49□□□□□ -0.73
SHMT1-205ENST00000395684 YPEL2Q96QA6 119 aa10.49□□□□□ -0.73
SHMT1-205ENST00000395684 SNHG12Q9BXW3 62 aa10.49□□□□□ -0.73
SHMT1-205ENST00000395684 NPVFQ9HCQ7 196 aa10.49□□□□□ -0.73
SHMT1-205ENST00000395684 JPT1Q9UK76 154 aa10.49□□□□□ -0.73
SHMT1-205ENST00000395684 TCF19Q9Y242 345 aa10.49□□□□□ -0.73
SHMT1-205ENST00000395684 TET2Q6N021 2002 aaPredicted RBP10.49□□□□□ -0.73
SHMT1-205ENST00000395684 SLC17A3O00476 420 aa10.48□□□□□ -0.73
SHMT1-205ENST00000395684 IL6RP08887 468 aaPredicted RBP10.48□□□□□ -0.73
SHMT1-205ENST00000395684 CBLN1P23435 193 aa10.48□□□□□ -0.73
SHMT1-205ENST00000395684 EFNB3Q15768 340 aa10.48□□□□□ -0.73
SHMT1-205ENST00000395684 ZNRF1Q8ND25 227 aa10.48□□□□□ -0.73
SHMT1-205ENST00000395684 OR2Z1Q8NG97 314 aa10.48□□□□□ -0.73
SHMT1-205ENST00000395684 S1PR3Q99500 378 aa10.48□□□□□ -0.73
SHMT1-205ENST00000395684 CBLN4Q9NTU7 201 aa10.48□□□□□ -0.73
SHMT1-205ENST00000395684 NAGKQ9UJ70 344 aa10.48□□□□□ -0.73
SHMT1-205ENST00000395684 IGHV3OR15-7A0A075B7D8 119 aa10.48□□□□□ -0.73
SHMT1-205ENST00000395684 GCHFRP30047 84 aa10.48□□□□□ -0.73
SHMT1-205ENST00000395684 LINC00310P59036 64 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms