RNA–Protein interactions for RNA: ENST00000394082.8

SNRPA1-202, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-202ENST00000394082 OR11H12B2RN74 326 aa13.17□□□□□ -0.3
SNRPA1-202ENST00000394082 OR2J3O76001 311 aa13.17□□□□□ -0.3
SNRPA1-202ENST00000394082 KBTBD11O94819 623 aa13.17□□□□□ -0.3
SNRPA1-202ENST00000394082 DHFRP00374 187 aa13.17□□□□□ -0.3
SNRPA1-202ENST00000394082 CD7P09564 240 aa13.17□□□□□ -0.3
SNRPA1-202ENST00000394082 RBMY1DP0C7P1 496 aaKnown RBP13.17□□□□□ -0.3
SNRPA1-202ENST00000394082 ZNF735P0CB33 412 aa13.17□□□□□ -0.3
SNRPA1-202ENST00000394082 RPL30P62888 115 aaKnown RBP13.17□□□□□ -0.3
SNRPA1-202ENST00000394082 MSMO1Q15800 293 aa13.17□□□□□ -0.3
SNRPA1-202ENST00000394082 C10orf55Q5SWW7 151 aa13.17□□□□□ -0.3
SNRPA1-202ENST00000394082 NR2C2APQ86WQ0 139 aa13.17□□□□□ -0.3
SNRPA1-202ENST00000394082 PUSL1Q8N0Z8 303 aaKnown RBP13.17□□□□□ -0.3
SNRPA1-202ENST00000394082 A8MWP6 167 aa13.16□□□□□ -0.3
SNRPA1-202ENST00000394082 IL6RP08887 468 aaPredicted RBP13.16□□□□□ -0.3
SNRPA1-202ENST00000394082 CBLN1P23435 193 aa13.16□□□□□ -0.3
SNRPA1-202ENST00000394082 RPL27AP46776 148 aaKnown RBP13.16□□□□□ -0.3
SNRPA1-202ENST00000394082 ZNF66Q6ZN08 573 aa13.16□□□□□ -0.3
SNRPA1-202ENST00000394082 DEFB125Q8N687 156 aa13.16□□□□□ -0.3
SNRPA1-202ENST00000394082 FANCD2OSQ96PS1 177 aa13.16□□□□□ -0.3
SNRPA1-202ENST00000394082 FYTTD1Q96QD9 318 aaKnown RBP13.16□□□□□ -0.3
SNRPA1-202ENST00000394082 ST6GALNAC5Q9BVH7 336 aa13.16□□□□□ -0.3
SNRPA1-202ENST00000394082 FBXL7Q9UJT9 491 aa13.16□□□□□ -0.3
SNRPA1-202ENST00000394082 ELF5Q9UKW6 265 aaPredicted RBP13.16□□□□□ -0.3
SNRPA1-202ENST00000394082 PLECQ15149 4684 aaKnown RBP13.16□□□□□ -0.3
SNRPA1-202ENST00000394082 NOTOA8MTQ0 251 aa13.15□□□□□ -0.3
SNRPA1-202ENST00000394082 PPP5D1E7EU14 171 aa13.15□□□□□ -0.3
SNRPA1-202ENST00000394082 MRPS14O60783 128 aaKnown RBP13.15□□□□□ -0.3
SNRPA1-202ENST00000394082 HIST1H1BP16401 226 aaKnown RBP13.15□□□□□ -0.3
SNRPA1-202ENST00000394082 NFYAP23511 347 aaPredicted RBP13.15□□□□□ -0.3
SNRPA1-202ENST00000394082 FGF9P31371 208 aaPredicted RBP13.15□□□□□ -0.3
SNRPA1-202ENST00000394082 SLC16A13Q7RTY0 426 aa13.15□□□□□ -0.3
SNRPA1-202ENST00000394082 AIFM2Q9BRQ8 373 aa13.15□□□□□ -0.3
SNRPA1-202ENST00000394082 SRD5A3Q9H8P0 318 aa13.15□□□□□ -0.3
SNRPA1-202ENST00000394082 RETNQ9HD89 108 aa13.15□□□□□ -0.3
SNRPA1-202ENST00000394082 ANXA10Q9UJ72 324 aa13.15□□□□□ -0.3
SNRPA1-202ENST00000394082 IGKV1D-13A0A0B4J2D9 117 aa13.14□□□□□ -0.31
SNRPA1-202ENST00000394082 DPPA5A6NC42 116 aa13.14□□□□□ -0.31
SNRPA1-202ENST00000394082 HMX3A6NHT5 357 aa13.14□□□□□ -0.31
SNRPA1-202ENST00000394082 E7EUB6 86 aa13.14□□□□□ -0.31
SNRPA1-202ENST00000394082 OR2C1O95371 312 aa13.14□□□□□ -0.31
SNRPA1-202ENST00000394082 HRASP01112 189 aa13.14□□□□□ -0.31
SNRPA1-202ENST00000394082 FGF2P09038 288 aa13.14□□□□□ -0.31
SNRPA1-202ENST00000394082 IGKV1-13P0DP09 117 aa13.14□□□□□ -0.31
SNRPA1-202ENST00000394082 CTRB1P17538 263 aa13.14□□□□□ -0.31
SNRPA1-202ENST00000394082 PSMB6P28072 239 aa13.14□□□□□ -0.31
SNRPA1-202ENST00000394082 BRWD1-AS2P59051 145 aa13.14□□□□□ -0.31
SNRPA1-202ENST00000394082 GUCA2BQ16661 112 aa13.14□□□□□ -0.31
SNRPA1-202ENST00000394082 FAM106AQ4KMX7 169 aa13.14□□□□□ -0.31
SNRPA1-202ENST00000394082 CTRB2Q6GPI1 263 aa13.14□□□□□ -0.31
SNRPA1-202ENST00000394082 C22orf42Q6IC83 251 aa13.14□□□□□ -0.31
SNRPA1-202ENST00000394082 OR4A47Q6IF82 309 aa13.14□□□□□ -0.31
SNRPA1-202ENST00000394082 TPRA1Q86W33 373 aa13.14□□□□□ -0.31
SNRPA1-202ENST00000394082 VKORC1L1Q8N0U8 176 aa13.14□□□□□ -0.31
SNRPA1-202ENST00000394082 MFSD4AQ8N468 514 aa13.14□□□□□ -0.31
SNRPA1-202ENST00000394082 OR4A5Q8NH83 315 aa13.14□□□□□ -0.31
SNRPA1-202ENST00000394082 CCDC140Q96MF4 163 aa13.14□□□□□ -0.31
SNRPA1-202ENST00000394082 TRBV7-1A0A0A6YYK4 115 aa13.13□□□□□ -0.31
SNRPA1-202ENST00000394082 A0A1B0GW64 132 aa13.13□□□□□ -0.31
SNRPA1-202ENST00000394082 ARL3P36405 182 aa13.13□□□□□ -0.31
SNRPA1-202ENST00000394082 RPL8P62917 257 aaKnown RBP13.13□□□□□ -0.31
SNRPA1-202ENST00000394082 ANKRD55Q3KP44 614 aa13.13□□□□□ -0.31
SNRPA1-202ENST00000394082 TCTEX1D2Q8WW35 142 aa13.13□□□□□ -0.31
SNRPA1-202ENST00000394082 MARC2Q969Z3 335 aa13.13□□□□□ -0.31
SNRPA1-202ENST00000394082 EEF1AKMT3Q96AZ1 226 aa13.13□□□□□ -0.31
SNRPA1-202ENST00000394082 WDR89Q96FK6 387 aaPredicted RBP13.13□□□□□ -0.31
SNRPA1-202ENST00000394082 FAM110AQ9BQ89 295 aa13.13□□□□□ -0.31
SNRPA1-202ENST00000394082 BET1LQ9NYM9 111 aa13.13□□□□□ -0.31
SNRPA1-202ENST00000394082 TRAV25A0A0B4J276 109 aa13.12□□□□□ -0.31
SNRPA1-202ENST00000394082 TMEM213A2RRL7 107 aa13.12□□□□□ -0.31
SNRPA1-202ENST00000394082 J3QRK9 145 aa13.12□□□□□ -0.31
SNRPA1-202ENST00000394082 RBFOX2O43251 390 aaKnown RBP eCLIP13.12□□□□□ -0.31
SNRPA1-202ENST00000394082 NDUFB8O95169 186 aa13.12□□□□□ -0.31
SNRPA1-202ENST00000394082 HLA-AP01891 365 aaKnown RBP13.12□□□□□ -0.31
SNRPA1-202ENST00000394082 SCAND1P57086 179 aa13.12□□□□□ -0.31
SNRPA1-202ENST00000394082 GNG2P59768 71 aa13.12□□□□□ -0.31
SNRPA1-202ENST00000394082 GABARAPL2P60520 117 aa13.12□□□□□ -0.31
SNRPA1-202ENST00000394082 OR2B11Q5JQS5 317 aa13.12□□□□□ -0.31
SNRPA1-202ENST00000394082 ZNF57Q68EA5 555 aaPredicted RBP13.12□□□□□ -0.31
SNRPA1-202ENST00000394082 CLEC19AQ6UXS0 136 aa13.12□□□□□ -0.31
SNRPA1-202ENST00000394082 ZBTB34Q8NCN2 500 aa13.12□□□□□ -0.31
SNRPA1-202ENST00000394082 CXorf58Q96LI9 332 aa13.12□□□□□ -0.31
SNRPA1-202ENST00000394082 SRSF8Q9BRL6 282 aaKnown RBP13.12□□□□□ -0.31
SNRPA1-202ENST00000394082 SPATA2Q9UM82 520 aa13.12□□□□□ -0.31
SNRPA1-202ENST00000394082 IGLV11-55A0A075B6I3 123 aa13.11□□□□□ -0.31
SNRPA1-202ENST00000394082 TMEM235A6NFC5 223 aa13.11□□□□□ -0.31
SNRPA1-202ENST00000394082 C8orf88P0DMB2 117 aa13.11□□□□□ -0.31
SNRPA1-202ENST00000394082 HLA-GP17693 338 aa13.11□□□□□ -0.31
SNRPA1-202ENST00000394082 UBE2UQ5VVX9 321 aa13.11□□□□□ -0.31
SNRPA1-202ENST00000394082 TMEM61Q8N0U2 210 aa13.11□□□□□ -0.31
SNRPA1-202ENST00000394082 NUDCD2Q8WVJ2 157 aa13.11□□□□□ -0.31
SNRPA1-202ENST00000394082 WFDC10AQ9H1F0 79 aa13.11□□□□□ -0.31
SNRPA1-202ENST00000394082 SSX5O60225 188 aa13.1□□□□□ -0.31
SNRPA1-202ENST00000394082 AREGP15514 252 aa13.1□□□□□ -0.31
SNRPA1-202ENST00000394082 EDN2P20800 178 aa13.1□□□□□ -0.31
SNRPA1-202ENST00000394082 ELLP55199 621 aaPredicted RBP13.1□□□□□ -0.31
SNRPA1-202ENST00000394082 POU2AF1Q16633 256 aa13.1□□□□□ -0.31
SNRPA1-202ENST00000394082 UXS1Q8NBZ7 420 aa13.1□□□□□ -0.31
SNRPA1-202ENST00000394082 GGTLC1Q9BX51 225 aa13.1□□□□□ -0.31
SNRPA1-202ENST00000394082 TXNL4BQ9NX01 149 aaKnown RBP13.1□□□□□ -0.31
SNRPA1-202ENST00000394082 TAS2R8Q9NYW2 309 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms