RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 ZNF818PQ6ZRF7 136 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 DPH3Q96FX2 82 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 TWSG1Q9GZX9 223 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 SOCS1O15524 211 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 CDAP32320 146 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 SIGLEC14Q08ET2 396 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 ZNF362Q5T0B9 420 aaPredicted RBP7.55□□□□□ -1.2
LIG3-202ENST00000378526 ANKRD34AQ69YU3 496 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 KIRREL2Q6UWL6 708 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 CSTL1Q9H114 145 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 GP6Q9HCN6 339 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 SLC25A10Q9UBX3 287 aaPredicted RBP7.55□□□□□ -1.2
LIG3-202ENST00000378526 PSG3Q16557 428 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 FAM90A2PQ658T7 463 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 SFTA2Q6UW10 78 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 OR9G1Q8NH87 305 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 C16orf52Q8NHV5 167 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 GATAD1Q8WUU5 269 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 ZNF385AQ96PM9 386 aaKnown RBP7.55□□□□□ -1.2
LIG3-202ENST00000378526 F2RL2O00254 374 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 ATXN7O15265 892 aaPredicted RBP7.55□□□□□ -1.2
LIG3-202ENST00000378526 SUMO4Q6EEV6 95 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 PAX1P15863 534 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 SNRPD3P62318 126 aaKnown RBP7.55□□□□□ -1.2
LIG3-202ENST00000378526 SMIM20Q8N5G0 67 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 DOCK5Q9H7D0 1870 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 DOCK4Q8N1I0 1966 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 SPRY3O43610 288 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 SDF2L1Q9HCN8 221 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 PRR13Q9NZ81 148 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 TOGARAM1Q9Y4F4 1720 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 FXYD1O00168 92 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 FSCN3Q9NQT6 498 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 TNFRSF19Q9NS68 423 aa7.55□□□□□ -1.2
LIG3-202ENST00000378526 TRPM3Q9HCF6 1732 aaPredicted RBP7.54□□□□□ -1.2
LIG3-202ENST00000378526 LEPROTO15243 131 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 NCR2O95944 276 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 IGHG4P01861 327 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 IRF3Q14653 427 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 RREB1Q92766 1687 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 KNCNA6PVL3 124 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 A8MWP6 167 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 GZMBP10144 247 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 ARSAP15289 507 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 PNLIPP16233 465 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 FOXA3P55318 350 aaPredicted RBP7.54□□□□□ -1.2
LIG3-202ENST00000378526 ZNF750Q32MQ0 723 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 TP53INP2Q8IXH6 220 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 PLEKHB2Q96CS7 222 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 ABCA4P78363 2273 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 A0A1W2PNR3 127 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 K7EP13 123 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 SRP19P09132 144 aaKnown RBP7.54□□□□□ -1.2
LIG3-202ENST00000378526 GCHFRP30047 84 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 PRSS53Q2L4Q9 553 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 KLF17Q5JT82 389 aaPredicted RBP7.54□□□□□ -1.2
LIG3-202ENST00000378526 TMEFF1Q8IYR6 380 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 KLF16Q9BXK1 252 aaPredicted RBP7.54□□□□□ -1.2
LIG3-202ENST00000378526 KLK13Q9UKR3 277 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 TSSC4Q9Y5U2 329 aaPredicted RBP7.54□□□□□ -1.2
LIG3-202ENST00000378526 CEACAM4O75871 244 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 PRSS23O95084 383 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 RPS27P42677 84 aaKnown RBP7.54□□□□□ -1.2
LIG3-202ENST00000378526 SCD5Q86SK9 330 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 RFESDQ8TAC1 157 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 CLDN14O95500 239 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 TGIF1Q15583 401 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 SPATA46Q5T0L3 261 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 RAX2Q96IS3 184 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 MRPS21P82921 87 aaKnown RBP7.54□□□□□ -1.2
LIG3-202ENST00000378526 ZNF658BQ4V348 819 aaPredicted RBP7.54□□□□□ -1.2
LIG3-202ENST00000378526 FBXW9Q5XUX1 488 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 IFI27L1Q96BM0 104 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 TM4SF19Q96DZ7 209 aa7.54□□□□□ -1.2
LIG3-202ENST00000378526 C9orf118A6NHY6 69 aa7.53□□□□□ -1.2
LIG3-202ENST00000378526 PRRT4C9JH25 899 aa7.53□□□□□ -1.2
LIG3-202ENST00000378526 SLAQ13239 276 aa7.53□□□□□ -1.2
LIG3-202ENST00000378526 FAM89BQ8N5H3 189 aa7.53□□□□□ -1.2
LIG3-202ENST00000378526 B5MCH6 92 aa7.53□□□□□ -1.2
LIG3-202ENST00000378526 CXCL12P48061 93 aa7.53□□□□□ -1.2
LIG3-202ENST00000378526 RPL8P62917 257 aaKnown RBP7.53□□□□□ -1.2
LIG3-202ENST00000378526 PLAURQ03405 335 aa7.53□□□□□ -1.2
LIG3-202ENST00000378526 GNRHR2Q96P88 292 aa7.53□□□□□ -1.2
LIG3-202ENST00000378526 C1QTNF4Q9BXJ3 329 aa7.53□□□□□ -1.2
LIG3-202ENST00000378526 MRM2Q9UI43 246 aaKnown RBP7.53□□□□□ -1.2
LIG3-202ENST00000378526 EML6Q6ZMW3 1958 aa7.53□□□□□ -1.2
LIG3-202ENST00000378526 AMBPP02760 352 aa7.53□□□□□ -1.2
LIG3-202ENST00000378526 FAM74A4Q5TZK3 123 aa7.53□□□□□ -1.2
LIG3-202ENST00000378526 GATD1Q8NB37 220 aa7.53□□□□□ -1.2
LIG3-202ENST00000378526 A0A1W2PQF6 199 aa7.53□□□□□ -1.2
LIG3-202ENST00000378526 C9JAW5 83 aa7.53□□□□□ -1.2
LIG3-202ENST00000378526 ZNHIT1O43257 154 aa7.53□□□□□ -1.2
LIG3-202ENST00000378526 MAGEA5P43359 124 aa7.53□□□□□ -1.2
LIG3-202ENST00000378526 H2BFSP57053 126 aa7.53□□□□□ -1.2
LIG3-202ENST00000378526 TMEM30BQ3MIR4 351 aa7.53□□□□□ -1.2
LIG3-202ENST00000378526 AQP3Q92482 292 aa7.53□□□□□ -1.2
LIG3-202ENST00000378526 ALKBH3Q96Q83 286 aaPredicted RBP7.53□□□□□ -1.2
LIG3-202ENST00000378526 GDF15Q99988 308 aa7.53□□□□□ -1.2
LIG3-202ENST00000378526 TRBV24-1A0A075B6N3 115 aa7.53□□□□□ -1.2
LIG3-202ENST00000378526 OR2H2O95918 312 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms