RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 MAST4O15021 2626 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 MAP3K5Q99683 1374 aa0.81□□□□□ -2.28
VPS13A-206ENST00000376646 TRAV41A0A0B4J266 112 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 OR4C45A6NMZ5 311 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 LST1O00453 97 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 PLA2G10O15496 165 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 S1PR2O95136 353 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 IFNA5P01569 189 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 UCHL1P09936 223 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 CA5AP35218 305 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 TAS2R20P59543 309 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 MAGOHP61326 146 aaKnown RBP0.8□□□□□ -2.28
VPS13A-206ENST00000376646 EMX1Q04741 257 aaPredicted RBP0.8□□□□□ -2.28
VPS13A-206ENST00000376646 BATFQ16520 125 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 GPR32P1Q8NGA4 272 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 ASB17Q8WXJ9 295 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 TMA16Q96EY4 203 aaKnown RBP0.8□□□□□ -2.28
VPS13A-206ENST00000376646 TIMM21Q9BVV7 248 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 MRPS26Q9BYN8 205 aaKnown RBP0.8□□□□□ -2.28
VPS13A-206ENST00000376646 PARVGQ9HBI0 331 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 GPR84Q9NQS5 396 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 PRO2289Q9P1D8 64 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 HHLA3Q9XRX5 114 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 RBM7Q9Y580 266 aaKnown RBP0.8□□□□□ -2.28
VPS13A-206ENST00000376646 KIAA1109Q2LD37 5005 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 GBF1Q92538 1859 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 DENND4BO75064 1496 aaPredicted RBP0.8□□□□□ -2.28
VPS13A-206ENST00000376646 COL6A5A8TX70 2615 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 RTEL1-TNFRSF6BF6WH68 1400 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 IGLV3-9A0A075B6K5 115 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 TMSB15BA0A087X1C1 80 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 J3QKU1 62 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 NSA2O95478 260 aaKnown RBP0.8□□□□□ -2.28
VPS13A-206ENST00000376646 UCHL3P15374 230 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 RAP1GDS1P52306 607 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 NKX2-5P52952 324 aaPredicted RBP0.8□□□□□ -2.28
VPS13A-206ENST00000376646 FXYD7P58549 80 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 RPL30P62888 115 aaKnown RBP0.8□□□□□ -2.28
VPS13A-206ENST00000376646 TNFAIP6P98066 277 aaPredicted RBP0.8□□□□□ -2.28
VPS13A-206ENST00000376646 SLC38A11Q08AI6 406 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 FABP9Q0Z7S8 132 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 MIAQ16674 131 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 TNFAIP8L3Q5GJ75 292 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 PABPC1L2AQ5JQF8 200 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 C8orf74Q6P047 294 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 SFXN4Q6P4A7 337 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 Q6ZTI0 123 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 LRRC28Q86X40 367 aaPredicted RBP0.8□□□□□ -2.28
VPS13A-206ENST00000376646 SLC22A24Q8N4F4 322 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 DEFB125Q8N687 156 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 LHFPL5Q8TAF8 219 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 OPTNQ96CV9 577 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 UBAP1Q9NZ09 502 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 GUCA1BQ9UMX6 200 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 ADCY9O60503 1353 aa0.8□□□□□ -2.28
VPS13A-206ENST00000376646 NUP160Q12769 1436 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 COL11A1P12107 1806 aaPredicted RBP0.79□□□□□ -2.28
VPS13A-206ENST00000376646 TGIF2-C20orf24A0A0A6YYL0 155 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 IGHV1-69-2A0A0G2JMI3 117 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 ZNF860A6NHJ4 632 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 A8MUN3 132 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 H3BT86 120 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 KLRC4O43908 158 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 DCTN3O75935 186 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 TNNC2P02585 160 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 TFPTP0C1Z6 253 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 DEFA4P12838 97 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 MARCKSL1P49006 195 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 RAB13P51153 203 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 TMEM258P61165 79 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 AP1S1P61966 158 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 ITGB3BPQ13352 177 aaPredicted RBP0.79□□□□□ -2.28
VPS13A-206ENST00000376646 ZNF791Q3KP31 576 aaPredicted RBP0.79□□□□□ -2.28
VPS13A-206ENST00000376646 KRTAP13-4Q3LI77 160 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 ACSM3Q53FZ2 586 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 LPCAT4Q643R3 524 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 SSX8Q7RTT4 187 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 TBC1D19Q8N5T2 526 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 OR2T4Q8NH00 348 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 SPACA4Q8TDM5 124 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 IMMP2LQ96T52 175 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 SPZ1Q9BXG8 430 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 AK3Q9UIJ7 227 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 ANKRD17O75179 2603 aaKnown RBP0.79□□□□□ -2.28
VPS13A-206ENST00000376646 TENM1Q9UKZ4 2725 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 TRANK1O15050 2925 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 PTPN13Q12923 2485 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 ZNF532Q9HCE3 1301 aa0.79□□□□□ -2.28
VPS13A-206ENST00000376646 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP0.78□□□□□ -2.28
VPS13A-206ENST00000376646 INMT-MINDY4F8WBC2 141 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 I3L521 148 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 PGLYRP1O75594 196 aaPredicted RBP0.78□□□□□ -2.28
VPS13A-206ENST00000376646 FAM228BP0C875 321 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 RPL28P46779 137 aaKnown RBP0.78□□□□□ -2.28
VPS13A-206ENST00000376646 TPI1P60174 286 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 UBE2IP63279 158 aaKnown RBP0.78□□□□□ -2.28
VPS13A-206ENST00000376646 FAM201AQ5SY85 155 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 HIST2H3PS2Q5TEC6 136 aa0.78□□□□□ -2.28
VPS13A-206ENST00000376646 ZNF705AQ6ZN79 300 aaPredicted RBP0.78□□□□□ -2.28
VPS13A-206ENST00000376646 OR1L8Q8NGR8 309 aa0.78□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms