RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 OR2H1Q9GZK4 316 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 PLEKHB1Q9UF11 243 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-202ENST00000375405 FAM236DA0A1B0GTK5 79 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 PATE4P0C8F1 98 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 FAM236CP0DP71 79 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 GALP22466 123 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 FKBP1AP62942 108 aaKnown RBP4.01□□□□□ -1.77
SCN1A-202ENST00000375405 PAX8Q06710 450 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 SYT14P1Q58G82 188 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 CADM3Q8N126 398 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 VKORC1Q9BQB6 163 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 DERL1Q9BUN8 251 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 GSX2Q9BZM3 304 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 TINAGQ9UJW2 476 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 PTPRUQ92729 1446 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 M0QZK8 103 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 DAOP14920 347 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 HIST1H1DP16402 221 aaKnown RBP4.01□□□□□ -1.77
SCN1A-202ENST00000375405 HERV-K104P63124 156 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 PRDX1Q06830 199 aaKnown RBP4.01□□□□□ -1.77
SCN1A-202ENST00000375405 MORN3Q6PF18 240 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-202ENST00000375405 TTC9BQ8N6N2 239 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 CYB561D1Q8N8Q1 229 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 NOXO1Q8NFA2 376 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 FAM57AQ8TBR7 257 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 MDFIQ99750 246 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 RPRMQ9NS64 109 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 KNDC1Q76NI1 1749 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 UBR1Q8IWV7 1749 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 FAM90A10PA6NDY2 464 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 FAM90A20PA6NIJ5 464 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 FAM90A8PA6NJQ4 464 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 UPK2O00526 184 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 PRYO14603 147 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 FAM90A13PP0C7W8 464 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 FAM90A24PP0C7X0 464 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 GPX4P36969 197 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-202ENST00000375405 MAGEA5P43359 124 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 RPS20P60866 119 aaKnown RBP4.01□□□□□ -1.77
SCN1A-202ENST00000375405 DAD1P61803 113 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 GPBAR1Q8TDU6 330 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 PDXPQ96GD0 296 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 ZNF414Q96IQ9 312 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 MIXL1Q9H2W2 232 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 ST6GALNAC4Q9H4F1 302 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 RETNQ9HD89 108 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 FOXD3Q9UJU5 478 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-202ENST00000375405 TMEM238C9JI98 176 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 GABRG2P18507 467 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 CCL1P22362 96 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 COL10A1Q03692 680 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 MESTQ5EB52 335 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 NHLRC3Q5JS37 347 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 PWWP2BQ6NUJ5 590 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 Q6ZNX1 250 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 SSBP3Q9BWW4 388 aaPredicted RBP4□□□□□ -1.77
SCN1A-202ENST00000375405 HAPLN2Q9GZV7 340 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 SLC45A1Q9Y2W3 748 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 RNF114Q9Y508 228 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 IGKV2D-24A0A075B6R9 120 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 PYCARD-AS1I3L0S3 204 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 NTN1O95631 604 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 TFF2Q03403 129 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 IBA57Q5T440 356 aaKnown RBP4□□□□□ -1.77
SCN1A-202ENST00000375405 HEPN1Q6WQI6 88 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 ACP7Q6ZNF0 438 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 LINC01560Q8TB33 94 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 TAF15Q92804 592 aaKnown RBP eCLIP4□□□□□ -1.77
SCN1A-202ENST00000375405 Q9N2K0 584 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 YBX2Q9Y2T7 364 aaKnown RBP4□□□□□ -1.77
SCN1A-202ENST00000375405 MRC1P22897 1456 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 ANK1P16157 1881 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 LEPROTO15243 131 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 PRTN3P24158 256 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 GPR183P32249 361 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 CDKN1BP46527 198 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 ZP4Q12836 540 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 ERCC8Q13216 396 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 ZNF585BQ52M93 769 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 VN1R2Q8NFZ6 395 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 CHCHD1Q96BP2 118 aaKnown RBP4□□□□□ -1.77
SCN1A-202ENST00000375405 ZNF479Q96JC4 524 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 PRSS22Q9GZN4 317 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 GP6Q9HCN6 339 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 SNHG28P0DPA3 235 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 LHX2P50458 406 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 FXYD3Q14802 87 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 HIKESHIQ53FT3 197 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 WDR88Q6ZMY6 472 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 ZNF503Q96F45 646 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 CNOT2Q9NZN8 540 aaKnown RBP4□□□□□ -1.77
SCN1A-202ENST00000375405 NAV3Q8IVL0 2385 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 MYOM1P52179 1685 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 DSCAMO60469 2012 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 IGKV1OR2-108A0A075B7D4 117 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 GAGE12JA6NER3 117 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 FAM90A7PA6NKC0 464 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 FAM90A22PA8MWA6 464 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 FAM90A12PA8MX19 464 aa4□□□□□ -1.77
SCN1A-202ENST00000375405 FAM90A23PA8MXZ1 464 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 347 ms