RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 LY6LH3BQJ8 138 aa11.15□□□□□ -0.62
PTPRF-202ENST00000372405 SHOXO15266 292 aa11.15□□□□□ -0.62
PTPRF-202ENST00000372405 ARG1P05089 322 aa11.15□□□□□ -0.62
PTPRF-202ENST00000372405 SEC11BP0C7V7 166 aa11.15□□□□□ -0.62
PTPRF-202ENST00000372405 VDAC2P45880 294 aaPredicted RBP11.15□□□□□ -0.62
PTPRF-202ENST00000372405 EIF5AL1Q6IS14 154 aaKnown RBP11.15□□□□□ -0.62
PTPRF-202ENST00000372405 PDPNQ86YL7 162 aa11.15□□□□□ -0.62
PTPRF-202ENST00000372405 PUSL1Q8N0Z8 303 aaKnown RBP11.15□□□□□ -0.62
PTPRF-202ENST00000372405 NRGNQ92686 78 aa11.15□□□□□ -0.62
PTPRF-202ENST00000372405 RITA1Q96K30 269 aa11.15□□□□□ -0.62
PTPRF-202ENST00000372405 HARBI1Q96MB7 349 aa11.15□□□□□ -0.62
PTPRF-202ENST00000372405 TCF19Q9Y242 345 aa11.15□□□□□ -0.62
PTPRF-202ENST00000372405 IGHV3-72A0A0B4J1Y9 119 aa11.14□□□□□ -0.63
PTPRF-202ENST00000372405 C15orf62A8K5M9 175 aa11.14□□□□□ -0.63
PTPRF-202ENST00000372405 UPK2O00526 184 aa11.14□□□□□ -0.63
PTPRF-202ENST00000372405 IGLV2-23P01705 113 aa11.14□□□□□ -0.63
PTPRF-202ENST00000372405 IL3RAP26951 378 aa11.14□□□□□ -0.63
PTPRF-202ENST00000372405 ATP6V0CP27449 155 aa11.14□□□□□ -0.63
PTPRF-202ENST00000372405 RPS16P62249 146 aaKnown RBP11.14□□□□□ -0.63
PTPRF-202ENST00000372405 LCN2P80188 198 aa11.14□□□□□ -0.63
PTPRF-202ENST00000372405 RUNX1Q01196 453 aa11.14□□□□□ -0.63
PTPRF-202ENST00000372405 KLRD1Q13241 179 aa11.14□□□□□ -0.63
PTPRF-202ENST00000372405 AANATQ16613 207 aa11.14□□□□□ -0.63
PTPRF-202ENST00000372405 LHX4Q969G2 390 aa11.14□□□□□ -0.63
PTPRF-202ENST00000372405 FLYWCH2Q96CP2 140 aaKnown RBP11.14□□□□□ -0.63
PTPRF-202ENST00000372405 CIB3Q96Q77 187 aaPredicted RBP11.14□□□□□ -0.63
PTPRF-202ENST00000372405 MMP26Q9NRE1 261 aa11.14□□□□□ -0.63
PTPRF-202ENST00000372405 WASHC3Q9Y3C0 194 aa11.14□□□□□ -0.63
PTPRF-202ENST00000372405 CENPEQ02224 2701 aa11.14□□□□□ -0.63
PTPRF-202ENST00000372405 USP9YO00507 2555 aaPredicted RBP11.14□□□□□ -0.63
PTPRF-202ENST00000372405 ZNF705EA8MWA4 302 aaPredicted RBP11.14□□□□□ -0.63
PTPRF-202ENST00000372405 PRTN3P24158 256 aa11.14□□□□□ -0.63
PTPRF-202ENST00000372405 SP5Q6BEB4 398 aaPredicted RBP11.14□□□□□ -0.63
PTPRF-202ENST00000372405 OR8G2PQ6IF36 304 aa11.14□□□□□ -0.63
PTPRF-202ENST00000372405 OR11H6Q8NGC7 330 aa11.14□□□□□ -0.63
PTPRF-202ENST00000372405 OR4C13Q8NGP0 309 aa11.14□□□□□ -0.63
PTPRF-202ENST00000372405 BET1LQ9NYM9 111 aa11.14□□□□□ -0.63
PTPRF-202ENST00000372405 NUP50Q9UKX7 468 aa11.14□□□□□ -0.63
PTPRF-202ENST00000372405 STRAPQ9Y3F4 350 aaKnown RBP11.14□□□□□ -0.63
PTPRF-202ENST00000372405 IGHV1-3A0A0C4DH29 117 aa11.13□□□□□ -0.63
PTPRF-202ENST00000372405 A8MXK9 166 aa11.13□□□□□ -0.63
PTPRF-202ENST00000372405 PDLIM4P50479 330 aa11.13□□□□□ -0.63
PTPRF-202ENST00000372405 LRRC20Q8TCA0 184 aa11.13□□□□□ -0.63
PTPRF-202ENST00000372405 TMEM170AQ8WVE7 144 aa11.13□□□□□ -0.63
PTPRF-202ENST00000372405 PFDN2Q9UHV9 154 aa11.13□□□□□ -0.63
PTPRF-202ENST00000372405 PLXNB1O43157 2135 aa11.13□□□□□ -0.63
PTPRF-202ENST00000372405 TENM4Q6N022 2769 aa11.13□□□□□ -0.63
PTPRF-202ENST00000372405 ODF3BA8MYP8 253 aa11.12□□□□□ -0.63
PTPRF-202ENST00000372405 DFFBO76075 338 aa11.12□□□□□ -0.63
PTPRF-202ENST00000372405 KBTBD11O94819 623 aa11.12□□□□□ -0.63
PTPRF-202ENST00000372405 FHITP49789 147 aa11.12□□□□□ -0.63
PTPRF-202ENST00000372405 HSPE1P61604 102 aaKnown RBP11.12□□□□□ -0.63
PTPRF-202ENST00000372405 HBG1P69891 147 aa11.12□□□□□ -0.63
PTPRF-202ENST00000372405 HBG2P69892 147 aa11.12□□□□□ -0.63
PTPRF-202ENST00000372405 SLC38A11Q08AI6 406 aa11.12□□□□□ -0.63
PTPRF-202ENST00000372405 C1orf122Q6ZSJ8 110 aa11.12□□□□□ -0.63
PTPRF-202ENST00000372405 KIR3DL3Q8N743 410 aa11.12□□□□□ -0.63
PTPRF-202ENST00000372405 MARVELD3Q96A59 401 aa11.12□□□□□ -0.63
PTPRF-202ENST00000372405 MS4A7Q9GZW8 240 aaPredicted RBP11.12□□□□□ -0.63
PTPRF-202ENST00000372405 OR51B2Q9Y5P1 312 aa11.12□□□□□ -0.63
PTPRF-202ENST00000372405 A0A1W2PPI3 338 aa11.12□□□□□ -0.63
PTPRF-202ENST00000372405 ENSAO43768 121 aaKnown RBP11.12□□□□□ -0.63
PTPRF-202ENST00000372405 FGF2P09038 288 aa11.12□□□□□ -0.63
PTPRF-202ENST00000372405 MC5RP33032 325 aa11.12□□□□□ -0.63
PTPRF-202ENST00000372405 RAB13P51153 203 aa11.12□□□□□ -0.63
PTPRF-202ENST00000372405 PXDC1Q5TGL8 231 aa11.12□□□□□ -0.63
PTPRF-202ENST00000372405 VMO1Q7Z5L0 202 aa11.12□□□□□ -0.63
PTPRF-202ENST00000372405 C10orf105Q8TEF2 133 aa11.12□□□□□ -0.63
PTPRF-202ENST00000372405 SAT2Q96F10 170 aaPredicted RBP11.12□□□□□ -0.63
PTPRF-202ENST00000372405 TSNAXQ99598 290 aaKnown RBP11.12□□□□□ -0.63
PTPRF-202ENST00000372405 SIRPDQ9H106 197 aa11.12□□□□□ -0.63
PTPRF-202ENST00000372405 UNKLQ9H9P5 680 aaKnown RBP11.12□□□□□ -0.63
PTPRF-202ENST00000372405 PRNDQ9UKY0 176 aa11.12□□□□□ -0.63
PTPRF-202ENST00000372405 MAP1AP78559 2803 aaPredicted RBP11.12□□□□□ -0.63
PTPRF-202ENST00000372405 IGHV2-70DA0A0C4DH43 119 aa11.11□□□□□ -0.63
PTPRF-202ENST00000372405 RRHO14718 337 aa11.11□□□□□ -0.63
PTPRF-202ENST00000372405 OPN1MWP04001 364 aa11.11□□□□□ -0.63
PTPRF-202ENST00000372405 OPN1MW2P0DN77 364 aa11.11□□□□□ -0.63
PTPRF-202ENST00000372405 OPN1MW3P0DN78 364 aa11.11□□□□□ -0.63
PTPRF-202ENST00000372405 COX6B1P14854 86 aa11.11□□□□□ -0.63
PTPRF-202ENST00000372405 ATP5J2P56134 94 aa11.11□□□□□ -0.63
PTPRF-202ENST00000372405 MRGPRG-AS1Q2M3A8 158 aa11.11□□□□□ -0.63
PTPRF-202ENST00000372405 TOR2AQ5JU69 321 aa11.11□□□□□ -0.63
PTPRF-202ENST00000372405 TMEM182Q6ZP80 229 aaPredicted RBP11.11□□□□□ -0.63
PTPRF-202ENST00000372405 LHFPL4Q7Z7J7 247 aa11.11□□□□□ -0.63
PTPRF-202ENST00000372405 LILRB2Q8N423 598 aa11.11□□□□□ -0.63
PTPRF-202ENST00000372405 AIFM2Q9BRQ8 373 aa11.11□□□□□ -0.63
PTPRF-202ENST00000372405 HEYLQ9NQ87 328 aaPredicted RBP11.11□□□□□ -0.63
PTPRF-202ENST00000372405 TPSG1Q9NRR2 321 aa11.11□□□□□ -0.63
PTPRF-202ENST00000372405 CACFD1Q9UGQ2 172 aa11.11□□□□□ -0.63
PTPRF-202ENST00000372405 ZNF257Q9Y2Q1 563 aa11.11□□□□□ -0.63
PTPRF-202ENST00000372405 AMMECR1Q9Y4X0 333 aaPredicted RBP11.11□□□□□ -0.63
PTPRF-202ENST00000372405 INSIG2Q9Y5U4 225 aa11.11□□□□□ -0.63
PTPRF-202ENST00000372405 IGHV4-61A0A0C4DH41 118 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 TEX50A0A1B0GTY4 177 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 VWC2LB2RUY7 222 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 FAM157AC9JC47 383 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 RNASEK-C17orf49H0YIS7 233 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 PAX6P26367 422 aa11.1□□□□□ -0.63
PTPRF-202ENST00000372405 TPTE2P1Q5T6R2 138 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms