RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 BMPR1BO00238 502 aa7.44□□□□□ -1.22
UPF2-202ENST00000357604 NPY1RP25929 384 aa7.44□□□□□ -1.22
UPF2-202ENST00000357604 PRSS8Q16651 343 aa7.44□□□□□ -1.22
UPF2-202ENST00000357604 SP6Q3SY56 376 aa7.44□□□□□ -1.22
UPF2-202ENST00000357604 TMEM167AQ8TBQ9 72 aa7.44□□□□□ -1.22
UPF2-202ENST00000357604 MS4A10Q96PG2 267 aa7.44□□□□□ -1.22
UPF2-202ENST00000357604 SHISA3A0PJX4 238 aa7.43□□□□□ -1.22
UPF2-202ENST00000357604 CLDN34H7C241 214 aa7.43□□□□□ -1.22
UPF2-202ENST00000357604 TAAR5O14804 337 aa7.43□□□□□ -1.22
UPF2-202ENST00000357604 SLC31A2O15432 143 aa7.43□□□□□ -1.22
UPF2-202ENST00000357604 SYNGR2O43760 224 aa7.43□□□□□ -1.22
UPF2-202ENST00000357604 NDUFA7O95182 113 aa7.43□□□□□ -1.22
UPF2-202ENST00000357604 CSN1S1P47710 185 aa7.43□□□□□ -1.22
UPF2-202ENST00000357604 ETV3LQ6ZN32 361 aa7.43□□□□□ -1.22
UPF2-202ENST00000357604 FGFRL1Q8N441 504 aa7.43□□□□□ -1.22
UPF2-202ENST00000357604 Q8N7P7 452 aa7.43□□□□□ -1.22
UPF2-202ENST00000357604 LINC00574Q9H8X3 128 aa7.43□□□□□ -1.22
UPF2-202ENST00000357604 TRBV7-1A0A0A6YYK4 115 aa7.43□□□□□ -1.22
UPF2-202ENST00000357604 PBDC1Q9BVG4 233 aa7.43□□□□□ -1.22
UPF2-202ENST00000357604 FOXE3Q13461 319 aa7.43□□□□□ -1.22
UPF2-202ENST00000357604 ADAD2Q8NCV1 583 aaKnown RBP7.43□□□□□ -1.22
UPF2-202ENST00000357604 NPBQ8NG41 125 aa7.43□□□□□ -1.22
UPF2-202ENST00000357604 FAM110DQ8TAY7 271 aaPredicted RBP7.43□□□□□ -1.22
UPF2-202ENST00000357604 A0A0D9SG52 128 aa7.43□□□□□ -1.22
UPF2-202ENST00000357604 ZNF785A8K8V0 405 aa7.43□□□□□ -1.22
UPF2-202ENST00000357604 HNRNPCP07910 306 aaKnown RBP eCLIP7.43□□□□□ -1.22
UPF2-202ENST00000357604 GIPP09681 153 aaPredicted RBP7.43□□□□□ -1.22
UPF2-202ENST00000357604 ARL3P36405 182 aa7.43□□□□□ -1.22
UPF2-202ENST00000357604 SRSF12Q8WXF0 261 aaKnown RBP7.43□□□□□ -1.22
UPF2-202ENST00000357604 SEC22CQ9BRL7 303 aa7.43□□□□□ -1.22
UPF2-202ENST00000357604 C15orf61A6NNL5 157 aa7.42□□□□□ -1.22
UPF2-202ENST00000357604 PPT1P50897 306 aa7.42□□□□□ -1.22
UPF2-202ENST00000357604 BAK1Q16611 211 aa7.42□□□□□ -1.22
UPF2-202ENST00000357604 ACOT6Q3I5F7 207 aaPredicted RBP7.42□□□□□ -1.22
UPF2-202ENST00000357604 KLHDC1Q8N7A1 406 aa7.42□□□□□ -1.22
UPF2-202ENST00000357604 RNASEH2CQ8TDP1 164 aaKnown RBP7.42□□□□□ -1.22
UPF2-202ENST00000357604 C1orf147Q96MC9 270 aaPredicted RBP7.42□□□□□ -1.22
UPF2-202ENST00000357604 NMES1Q9C002 83 aa7.42□□□□□ -1.22
UPF2-202ENST00000357604 RANGRFQ9HD47 186 aaPredicted RBP7.42□□□□□ -1.22
UPF2-202ENST00000357604 ALG5Q9Y673 324 aa7.42□□□□□ -1.22
UPF2-202ENST00000357604 A6NDX4 124 aa7.42□□□□□ -1.22
UPF2-202ENST00000357604 LINC01619G3V211 115 aa7.42□□□□□ -1.22
UPF2-202ENST00000357604 CD37P11049 281 aa7.42□□□□□ -1.22
UPF2-202ENST00000357604 DLX6P56179 175 aa7.42□□□□□ -1.22
UPF2-202ENST00000357604 PFDN5Q99471 154 aa7.42□□□□□ -1.22
UPF2-202ENST00000357604 TXN2Q99757 166 aa7.42□□□□□ -1.22
UPF2-202ENST00000357604 ZNF436Q9C0F3 470 aaPredicted RBP7.42□□□□□ -1.22
UPF2-202ENST00000357604 GTF3C1Q12789 2109 aa7.42□□□□□ -1.22
UPF2-202ENST00000357604 HELTA6NFD8 242 aa7.42□□□□□ -1.22
UPF2-202ENST00000357604 HMX3A6NHT5 357 aa7.42□□□□□ -1.22
UPF2-202ENST00000357604 SH2D7A6NKC9 451 aaPredicted RBP7.42□□□□□ -1.22
UPF2-202ENST00000357604 DHRS2Q13268 280 aa7.42□□□□□ -1.22
UPF2-202ENST00000357604 STPG3Q8N7X2 389 aa7.42□□□□□ -1.22
UPF2-202ENST00000357604 ZBTB8BQ8NAP8 495 aaPredicted RBP7.42□□□□□ -1.22
UPF2-202ENST00000357604 ANAPC10Q9UM13 185 aa7.42□□□□□ -1.22
UPF2-202ENST00000357604 TMEM187Q14656 261 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 KLHL30-AS1Q8NEE0 82 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 ZNF471Q9BX82 626 aaPredicted RBP7.41□□□□□ -1.22
UPF2-202ENST00000357604 P2RY1P47900 373 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 ZNF562Q6V9R5 426 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 RNF144BQ7Z419 303 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 GTSCR1Q86UQ5 136 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 NDUFA11Q86Y39 141 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 OR52E5Q8NH55 327 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 TOLLIPQ9H0E2 274 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 UQCC1Q9NVA1 299 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 TIMM9Q9Y5J7 89 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 DNAJC13O75165 2243 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 GGCTO75223 188 aaKnown RBP7.41□□□□□ -1.22
UPF2-202ENST00000357604 OR2J3O76001 311 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 PSMB6P28072 239 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 CD83Q01151 205 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 ZNF616Q08AN1 781 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 SPSB3Q6PJ21 355 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 NRARPQ7Z6K4 114 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 NECAP1Q8NC96 275 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 OR5AN1Q8NGI8 311 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 FAM181BA6NEQ2 426 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 GALR1P47211 349 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 SLC38A11Q08AI6 406 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 ELF5Q9UKW6 265 aaPredicted RBP7.41□□□□□ -1.22
UPF2-202ENST00000357604 SIGLEC9Q9Y336 463 aa7.41□□□□□ -1.22
UPF2-202ENST00000357604 OR5G3P0C626 314 aa7.4□□□□□ -1.22
UPF2-202ENST00000357604 FGF7P21781 194 aa7.4□□□□□ -1.22
UPF2-202ENST00000357604 GUCA2BQ16661 112 aa7.4□□□□□ -1.22
UPF2-202ENST00000357604 ZNF546Q86UE3 836 aa7.4□□□□□ -1.22
UPF2-202ENST00000357604 GNPNAT1Q96EK6 184 aaPredicted RBP7.4□□□□□ -1.22
UPF2-202ENST00000357604 ZGRF1Q86YA3 2104 aa7.4□□□□□ -1.22
UPF2-202ENST00000357604 SHANK1Q9Y566 2161 aa7.4□□□□□ -1.22
UPF2-202ENST00000357604 MSGN1A6NI15 193 aa7.4□□□□□ -1.22
UPF2-202ENST00000357604 CD24P25063 80 aa7.4□□□□□ -1.22
UPF2-202ENST00000357604 UCP1P25874 307 aa7.4□□□□□ -1.22
UPF2-202ENST00000357604 TAS2R30P59541 319 aa7.4□□□□□ -1.22
UPF2-202ENST00000357604 STPG2Q8N412 459 aa7.4□□□□□ -1.22
UPF2-202ENST00000357604 SGMS2Q8NHU3 365 aa7.4□□□□□ -1.22
UPF2-202ENST00000357604 ARPC5LQ9BPX5 153 aa7.4□□□□□ -1.22
UPF2-202ENST00000357604 RBKSQ9H477 322 aa7.4□□□□□ -1.22
UPF2-202ENST00000357604 RABAC1Q9UI14 185 aa7.4□□□□□ -1.22
UPF2-202ENST00000357604 VGLL3A8MV65 326 aa7.4□□□□□ -1.23
UPF2-202ENST00000357604 ZNF383Q8NA42 475 aa7.4□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms