RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 MMP9P14780 707 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 AKR1C4P17516 323 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 IL32P24001 234 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 APLNRP35414 380 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 MYCNOSP40205 109 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 TAS2R31P59538 309 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 SNTB1Q13884 538 aaKnown RBP1.84□□□□□ -2.11
VPS54-202ENST00000354504 TWIST1Q15672 202 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 DEFB109BQ30KR1 87 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 FAM201AQ5SY85 155 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 NCMAPQ5T1S8 102 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 C11orf88Q6PI97 169 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 LYPD2Q6UXB3 125 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 SLC25A48Q6ZT89 311 aaKnown RBP1.84□□□□□ -2.11
VPS54-202ENST00000354504 MRGPRGQ86SM5 289 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 Q8N6K4 173 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 CNEP1R1Q8N9A8 125 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 ZNF383Q8NA42 475 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 RTN4IP1Q8WWV3 396 aaPredicted RBP1.84□□□□□ -2.11
VPS54-202ENST00000354504 MBD3L1Q8WWY6 194 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 TNFRSF14Q92956 283 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 WFIKKN1Q96NZ8 548 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 YPEL2Q96QA6 119 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 S100A13Q99584 98 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 PHB2Q99623 299 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 SFXN3Q9BWM7 321 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 PAPOLGQ9BWT3 736 aaKnown RBP1.84□□□□□ -2.11
VPS54-202ENST00000354504 MFFQ9GZY8 342 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 PIGMQ9H3S5 423 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 ZNF442Q9H7R0 627 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 PATZ1Q9HBE1 687 aaKnown RBP1.84□□□□□ -2.11
VPS54-202ENST00000354504 MRPL36Q9P0J6 103 aaKnown RBP1.84□□□□□ -2.11
VPS54-202ENST00000354504 KIAA1456Q9P272 454 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 TINAGQ9UJW2 476 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 PKD1L1Q8TDX9 2849 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 NACAE9PAV3 2078 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 NAV2Q8IVL1 2488 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 TRAV17A0A0B4J275 112 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 FAM25EA8MYX2 175 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 SEC14L6B5MCN3 397 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 C19orf84I3L1E1 186 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 M0R233 179 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 HSPB6O14558 160 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 MRPS12O15235 138 aaKnown RBP1.84□□□□□ -2.11
VPS54-202ENST00000354504 IGHV2-70P01814 119 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 SEC11BP0C7V7 166 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 DAOP14920 347 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 MYOD1P15172 320 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 PRKACAP17612 351 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 GLRXP35754 106 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 PPP1CCP36873 323 aaKnown RBP1.84□□□□□ -2.11
VPS54-202ENST00000354504 MDH2P40926 338 aaKnown RBP1.84□□□□□ -2.11
VPS54-202ENST00000354504 TAS2R30P59541 319 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 CD81P60033 236 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 LRRC37A5PQ49AS3 106 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 UNQ6126/PRO20091Q6UXV3 157 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 TCF24Q7RTU0 167 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 TMEM252Q8N6L7 170 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 OR5H2Q8NGV7 314 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 CLDND2Q8NHS1 167 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 CA5BP1Q8WTZ4 195 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 SAT2Q96F10 170 aaPredicted RBP1.84□□□□□ -2.11
VPS54-202ENST00000354504 GRAMD2BQ96HH9 432 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 MMP26Q9NRE1 261 aa1.84□□□□□ -2.11
VPS54-202ENST00000354504 JMJD1CQ15652 2540 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 PKHD1L1Q86WI1 4243 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 A0A1W2PPE3 182 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 ODAMA1E959 279 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 A8MZ25 164 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 GPR31O00270 319 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 JTBO76095 146 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 ATG12O94817 140 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 S1PR2O95136 353 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 IGLV2-8P01709 118 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 HBZP02008 142 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 AESQ08117 197 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 ARFRP1Q13795 201 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 LRRC75BQ2VPJ9 315 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 ZNF718Q3SXZ3 478 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 PXDC1Q5TGL8 231 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 ADAM5Q6NVV9 412 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 TRAT1Q6PIZ9 186 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 UQCC3Q6UW78 93 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 BAP18Q8IXM2 172 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 RPP25LQ8N5L8 163 aaKnown RBP1.84□□□□□ -2.12
VPS54-202ENST00000354504 LINC00311Q8N616 119 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 TMEM178AQ8NBL3 297 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 OR10A7Q8NGE5 316 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 OR10G4Q8NGN3 311 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 MALSU1Q96EH3 234 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 BORCS8Q96FH0 119 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 RARRES2Q99969 163 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 CMSS1Q9BQ75 279 aaKnown RBP1.84□□□□□ -2.12
VPS54-202ENST00000354504 PYGO2Q9BRQ0 406 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 SEC11CQ9BY50 192 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 KCNJ16Q9NPI9 418 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 PLEKHJ1Q9NW61 149 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 IL19Q9UHD0 177 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 NUP50Q9UKX7 468 aa1.84□□□□□ -2.12
VPS54-202ENST00000354504 FZR1Q9UM11 496 aa1.84□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms