RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 NHLH1Q02575 133 aa13.24□□□□□ -0.29
HMGA1-202ENST00000347617 RPEL1Q2QD12 228 aa13.24□□□□□ -0.29
HMGA1-202ENST00000347617 DMRTA1Q5VZB9 504 aa13.24□□□□□ -0.29
HMGA1-202ENST00000347617 C11orf42Q8N5U0 333 aa13.24□□□□□ -0.29
HMGA1-202ENST00000347617 OR1L1Q8NH94 360 aa13.24□□□□□ -0.29
HMGA1-202ENST00000347617 UHRF2Q96PU4 802 aa13.24□□□□□ -0.29
HMGA1-202ENST00000347617 POLDIP2Q9Y2S7 368 aa13.24□□□□□ -0.29
HMGA1-202ENST00000347617 C5orf49A4QMS7 147 aa13.23□□□□□ -0.29
HMGA1-202ENST00000347617 IFNL4K9M1U5 179 aa13.23□□□□□ -0.29
HMGA1-202ENST00000347617 KLK10O43240 276 aa13.23□□□□□ -0.29
HMGA1-202ENST00000347617 RBFOX2O43251 390 aaKnown RBP eCLIP13.23□□□□□ -0.291e-11■■□□□ 12.4
HMGA1-202ENST00000347617 CTRLP40313 264 aa13.23□□□□□ -0.29
HMGA1-202ENST00000347617 EIF4EBP1Q13541 118 aaPredicted RBP13.23□□□□□ -0.29
HMGA1-202ENST00000347617 OR2D3Q8NGH3 330 aa13.23□□□□□ -0.29
HMGA1-202ENST00000347617 OR1L6Q8NGR2 347 aa13.23□□□□□ -0.29
HMGA1-202ENST00000347617 SARAFQ96BY9 339 aa13.23□□□□□ -0.29
HMGA1-202ENST00000347617 DNAJC4Q9NNZ3 241 aa13.23□□□□□ -0.29
HMGA1-202ENST00000347617 A0A1B0GUS0 222 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 C20orf202A1L168 122 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 GRIFINA4D1Z8 144 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 DIRC3C9JPN6 131 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 ZG16O60844 167 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 CRYAAP02489 173 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 GPX1P07203 203 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 OR10J4P0C629 311 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 COMPP49747 757 aaPredicted RBP13.22□□□□□ -0.29
HMGA1-202ENST00000347617 PLP2Q04941 152 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 AARDQ4LEZ3 155 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 Q6ZS92 163 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 TCF23Q7RTU1 214 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 H2BFWTQ7Z2G1 175 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 RTL8AQ9BWD3 113 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 ZNF407Q9C0G0 2248 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 DNAJC13O75165 2243 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 TRGV10A0A0A0MS01 117 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 FCN1O00602 326 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 ITGB1BP1O14713 200 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 CDIPTO14735 213 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 ZNF253O75346 499 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 OR5G3P0C626 314 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 AREGP15514 252 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 KLF3P57682 345 aaPredicted RBP13.22□□□□□ -0.29
HMGA1-202ENST00000347617 HLA-DRB5Q30154 266 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 SAPCD1Q5SSQ6 148 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 C19orf35Q6ZS72 473 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 Q8N7P7 452 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 OCC1Q8TAD7 63 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 FAM216AQ8WUB2 273 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 SFXN3Q9BWM7 321 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 CRIM1Q9NZV1 1036 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 CLCF1Q9UBD9 225 aa13.22□□□□□ -0.29
HMGA1-202ENST00000347617 CEP250Q9BV73 2442 aa13.21□□□□□ -0.29
HMGA1-202ENST00000347617 AHRRA9YTQ3 701 aa13.21□□□□□ -0.29
HMGA1-202ENST00000347617 SH2D1BO14796 132 aa13.21□□□□□ -0.29
HMGA1-202ENST00000347617 CCNOP22674 350 aa13.21□□□□□ -0.29
HMGA1-202ENST00000347617 CBLN1P23435 193 aa13.21□□□□□ -0.29
HMGA1-202ENST00000347617 G6PCP35575 357 aa13.21□□□□□ -0.29
HMGA1-202ENST00000347617 CDKN1AP38936 164 aa13.21□□□□□ -0.29
HMGA1-202ENST00000347617 UBE2G2P60604 165 aa13.21□□□□□ -0.29
HMGA1-202ENST00000347617 TLE1Q04724 770 aa13.21□□□□□ -0.29
HMGA1-202ENST00000347617 BATFQ16520 125 aa13.21□□□□□ -0.29
HMGA1-202ENST00000347617 LRP11Q86VZ4 500 aa13.21□□□□□ -0.29
HMGA1-202ENST00000347617 ZNF114Q8NC26 417 aa13.21□□□□□ -0.29
HMGA1-202ENST00000347617 OR5B3Q8NH48 314 aa13.21□□□□□ -0.29
HMGA1-202ENST00000347617 J3QW42 95 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 TMPRSS3P57727 454 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 ZNF718Q3SXZ3 478 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 SPATA45Q537H7 98 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 LEMD1Q68G75 181 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 KCNS1Q96KK3 526 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 POM121L2Q96KW2 1035 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 ZNF488Q96MN9 340 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 DERL1Q9BUN8 251 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 MRPS16Q9Y3D3 137 aaKnown RBP13.2□□□□□ -0.3
HMGA1-202ENST00000347617 DOCK11Q5JSL3 2073 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 TMEM30CPA0ZSE6 113 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 C15orf62A8K5M9 175 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 TCF21O43680 179 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 NXPH2O95156 264 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 OR2H2O95918 312 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 HNRNPA3P51991 378 aaKnown RBP13.2□□□□□ -0.3
HMGA1-202ENST00000347617 ERVK11-1P61568 191 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 HTD2P86397 168 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 ZNF146Q15072 292 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 GUSBP1Q15486 140 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 C3AR1Q16581 482 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 TDRG1Q3Y452 100 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 GALMQ96C23 342 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 HSD17B10Q99714 261 aaKnown RBP13.2□□□□□ -0.3
HMGA1-202ENST00000347617 FBXL7Q9UJT9 491 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 CDC42EP3Q9UKI2 254 aa13.2□□□□□ -0.3
HMGA1-202ENST00000347617 TRBV20OR9-2A0A075B6H5 130 aa13.19□□□□□ -0.3
HMGA1-202ENST00000347617 SNURFLB1AK76 121 aa13.19□□□□□ -0.3
HMGA1-202ENST00000347617 GFRA3O60609 400 aa13.19□□□□□ -0.3
HMGA1-202ENST00000347617 S1PR2O95136 353 aa13.19□□□□□ -0.3
HMGA1-202ENST00000347617 TOMM40O96008 361 aa13.19□□□□□ -0.3
HMGA1-202ENST00000347617 ARL14EPLP0DKL9 152 aa13.19□□□□□ -0.3
HMGA1-202ENST00000347617 IGLC2P0DOY2 106 aa13.19□□□□□ -0.3
HMGA1-202ENST00000347617 IGLC3P0DOY3 106 aa13.19□□□□□ -0.3
HMGA1-202ENST00000347617 COTL1Q14019 142 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms