RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 ZNRF1Q8ND25 227 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 OR13A1Q8NGR1 328 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 UBALD1Q8TB05 177 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 ACTR3CQ9C0K3 210 aaPredicted RBP10.63□□□□□ -0.71
CLK3-201ENST00000345005 MAGT1Q9H0U3 335 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 FAM234AQ9H0X4 552 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 SRD5A3Q9H8P0 318 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 GNG13Q9P2W3 67 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 NAT8Q9UHE5 227 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 URGCP-MRPS24S4R325 110 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 TRAV38-1A0A0B4J264 116 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 A8MWP6 167 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 FAM90A26D6RGX4 464 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 MBP02144 154 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 LINC00614P0C842 121 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 PAX9P55771 341 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 HTD2P86397 168 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 ZNF672Q499Z4 452 aaPredicted RBP10.63□□□□□ -0.71
CLK3-201ENST00000345005 FAM90A2PQ658T7 463 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 ZNF343Q6P1L6 599 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 SPNS3Q6ZMD2 512 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 ZNF788Q6ZQV5 615 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 TMEM183AQ8IXX5 376 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 TMEM217Q8N7C4 229 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 TPRX1Q8N7U7 411 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 DEFB108BQ8NET1 73 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 ACY3Q96HD9 319 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 TMEM204Q9BSN7 226 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 OR6C3Q9NZP0 311 aa10.63□□□□□ -0.71
CLK3-201ENST00000345005 ARID1AO14497 2285 aa10.62□□□□□ -0.71
CLK3-201ENST00000345005 DEFB108AA8MXU0 73 aa10.62□□□□□ -0.71
CLK3-201ENST00000345005 C15orf65H3BRN8 121 aa10.62□□□□□ -0.71
CLK3-201ENST00000345005 M0QZK8 103 aa10.62□□□□□ -0.71
CLK3-201ENST00000345005 SIAH2O43255 324 aa10.62□□□□□ -0.71
CLK3-201ENST00000345005 GGCTO75223 188 aaKnown RBP10.62□□□□□ -0.71
CLK3-201ENST00000345005 CLDN14O95500 239 aa10.62□□□□□ -0.71
CLK3-201ENST00000345005 GCGP01275 180 aa10.62□□□□□ -0.71
CLK3-201ENST00000345005 PRB1P04280 392 aa10.62□□□□□ -0.71
CLK3-201ENST00000345005 SOD3P08294 240 aa10.62□□□□□ -0.71
CLK3-201ENST00000345005 METTL15P1P0C7V9 234 aa10.62□□□□□ -0.71
CLK3-201ENST00000345005 JOSD1Q15040 202 aaPredicted RBP10.62□□□□□ -0.71
CLK3-201ENST00000345005 TMEM41BQ5BJD5 291 aa10.62□□□□□ -0.71
CLK3-201ENST00000345005 COA6Q5JTJ3 125 aaKnown RBP10.62□□□□□ -0.71
CLK3-201ENST00000345005 PACRGQ96M98 296 aaPredicted RBP10.62□□□□□ -0.71
CLK3-201ENST00000345005 GAFA1Q96PS6 74 aa10.62□□□□□ -0.71
CLK3-201ENST00000345005 GPR61Q9BZJ8 451 aa10.62□□□□□ -0.71
CLK3-201ENST00000345005 RAB9BQ9NP90 201 aa10.62□□□□□ -0.71
CLK3-201ENST00000345005 SPTBN1Q01082 2364 aaKnown RBP10.62□□□□□ -0.71
CLK3-201ENST00000345005 NKX6-3A6NJ46 265 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 TMEM250H0YL14 139 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 TMEM178BH3BS89 294 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 GYPAP02724 150 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 GNLYP22749 145 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 EDDM3BP56851 147 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 ATP6V1FQ16864 119 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 LRRC75BQ2VPJ9 315 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 ODF3L1Q8IXM7 274 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 MUC15Q8N387 334 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 ZBTB34Q8NCN2 500 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 OR52L2PQ8NGH6 319 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 ABHD5Q8WTS1 349 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 FRZBQ92765 325 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 ANAPC16Q96DE5 110 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 MISP3Q96FF7 219 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 OR5B12Q96R08 314 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 PYGO2Q9BRQ0 406 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 KCNS2Q9ULS6 477 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 ADGRG4Q8IZF6 3080 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 YLPM1P49750 1951 aaKnown RBP10.61□□□□□ -0.71
CLK3-201ENST00000345005 PPIAL4EA0A075B759 164 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 RNF212BA8MTL3 300 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 PPIAL4DF5H284 164 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 SYNGR2O43760 224 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 TMEM50AO95807 157 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 PPIAL4FP0DN26 164 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 FABP4P15090 132 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 LOXP28300 417 aaPredicted RBP10.61□□□□□ -0.71
CLK3-201ENST00000345005 SSTR5P35346 364 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 GAMTQ14353 236 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 MSMO1Q15800 293 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 TMEM241Q24JQ0 296 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 FAM216AQ8WUB2 273 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 CCL13Q99616 98 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 DCTN5Q9BTE1 182 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 RPRMQ9NS64 109 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 TMEM106BQ9NUM4 274 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 PPIAL4AQ9Y536 164 aa10.61□□□□□ -0.71
CLK3-201ENST00000345005 ABCA4P78363 2273 aa10.6□□□□□ -0.71
CLK3-201ENST00000345005 MARCH11A6NNE9 402 aa10.6□□□□□ -0.71
CLK3-201ENST00000345005 TNFSF12O43508 249 aa10.6□□□□□ -0.71
CLK3-201ENST00000345005 SOX15O60248 233 aa10.6□□□□□ -0.71
CLK3-201ENST00000345005 IGLV2-14P01704 120 aa10.6□□□□□ -0.71
CLK3-201ENST00000345005 FAM3BP58499 235 aaPredicted RBP10.6□□□□□ -0.71
CLK3-201ENST00000345005 RUNX1Q01196 453 aa10.6□□□□□ -0.71
CLK3-201ENST00000345005 TNFRSF9Q07011 255 aa10.6□□□□□ -0.71
CLK3-201ENST00000345005 CYP2G1PQ6ZSU1 146 aa10.6□□□□□ -0.71
CLK3-201ENST00000345005 CENPVQ7Z7K6 275 aaPredicted RBP10.6□□□□□ -0.71
CLK3-201ENST00000345005 TGIF2LXQ8IUE1 241 aa10.6□□□□□ -0.71
CLK3-201ENST00000345005 ZNF645Q8N7E2 425 aa10.6□□□□□ -0.71
CLK3-201ENST00000345005 RFESDQ8TAC1 157 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms