RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 NDUFS8O00217 210 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 SHOXO15266 292 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 TXNL1O43396 289 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 SNAPC5O75971 98 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 TOX4O94842 621 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 OPN1MWP04001 364 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 METTL15P1P0C7V9 234 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 OPN1MW2P0DN77 364 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 OPN1MW3P0DN78 364 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 CD24P25063 80 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 CNTFRP26992 372 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 ARL16Q0P5N6 197 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 CLINT1Q14677 625 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 CLEC12BQ2HXU8 276 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 SPANXN5Q5MJ07 72 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 TPTE2P1Q5T6R2 138 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 FAM71F2Q6NXP2 309 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 HAPLN4Q86UW8 402 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 OR8H3Q8N146 312 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 DYNAPQ8N1N2 210 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 KIR3DL3Q8N743 410 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 OR11H6Q8NGC7 330 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 LHX4Q969G2 390 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 RPEQ96AT9 228 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 OR4C12Q96R67 309 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 RAB40CQ96S21 281 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 TPSG1Q9NRR2 321 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 PSENENQ9NZ42 101 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 UBQLN2Q9UHD9 624 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 WASHC3Q9Y3C0 194 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 KPTNQ9Y664 436 aa3.34□□□□□ -1.87
MCF2-201ENST00000338585 NAV2Q8IVL1 2488 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 IGHV3OR16-10A0A075B7F0 116 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 RPS10-NUDT3A0A1W2PQS6 291 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 C15orf61A6NNL5 157 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 CEBPZOSA8MTT3 80 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 FAM90A26D6RGX4 464 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 TIMM23O14925 209 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 ATP6V1G1O75348 118 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 FOXH1O75593 365 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 HRASP01112 189 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 IFNA7P01567 189 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 IFNA17P01571 189 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 IGLV2-23P01705 113 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 GAPDHP04406 335 aaKnown RBP3.34□□□□□ -1.88
MCF2-201ENST00000338585 IL6RP08887 468 aaPredicted RBP3.34□□□□□ -1.88
MCF2-201ENST00000338585 PAX1P15863 534 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 HTR1DP28221 377 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 DYNLT3P51808 116 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 DVL1P1P54792 670 aaPredicted RBP3.34□□□□□ -1.88
MCF2-201ENST00000338585 RPL23AP62750 156 aaKnown RBP3.34□□□□□ -1.88
MCF2-201ENST00000338585 UBA52P62987 128 aaKnown RBP3.34□□□□□ -1.88
MCF2-201ENST00000338585 PJVKQ0ZLH3 352 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 POU2AF1Q16633 256 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 AARDQ4LEZ3 155 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 TMEM177Q53S58 311 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 GPR157Q5UAW9 335 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 DHRS7BQ6IAN0 325 aaPredicted RBP3.34□□□□□ -1.88
MCF2-201ENST00000338585 C1orf122Q6ZSJ8 110 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 PDPNQ86YL7 162 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 MAPK1IP1LQ8NDC0 245 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 OR5C1Q8NGR4 320 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 OR4A16Q8NH70 328 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 DTD1Q8TEA8 209 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 TMED6Q8WW62 240 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 FLYWCH2Q96CP2 140 aaKnown RBP3.34□□□□□ -1.88
MCF2-201ENST00000338585 SMIM8Q96KF7 97 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 MS4A7Q9GZW8 240 aaPredicted RBP3.34□□□□□ -1.88
MCF2-201ENST00000338585 DPM3Q9P2X0 92 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 INSIG2Q9Y5U4 225 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 RFNGQ9Y644 331 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 WSB1Q9Y6I7 421 aa3.34□□□□□ -1.88
MCF2-201ENST00000338585 PLXNB1O43157 2135 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 TEX46H3BTG2 121 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 UPK2O00526 184 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 SLC25A17O43808 307 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 RRASP10301 218 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 SSX2Q16385 188 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 C10orf55Q5SWW7 151 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 BAP18Q8IXM2 172 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 PUSL1Q8N0Z8 303 aaKnown RBP3.33□□□□□ -1.88
MCF2-201ENST00000338585 OR4C13Q8NGP0 309 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 STOML3Q8TAV4 291 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 OSR1Q8TAX0 266 aaPredicted RBP3.33□□□□□ -1.88
MCF2-201ENST00000338585 HINT2Q9BX68 163 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 UNKLQ9H9P5 680 aaKnown RBP3.33□□□□□ -1.88
MCF2-201ENST00000338585 TMEM14BQ9NUH8 114 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 NUP50Q9UKX7 468 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 TCF19Q9Y242 345 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 FOXA2Q9Y261 457 aaPredicted RBP3.33□□□□□ -1.88
MCF2-201ENST00000338585 AMMECR1Q9Y4X0 333 aaPredicted RBP3.33□□□□□ -1.88
MCF2-201ENST00000338585 MAP1AP78559 2803 aaPredicted RBP3.33□□□□□ -1.88
MCF2-201ENST00000338585 A0A096LNT2 108 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 FAM90A9PA6NNJ1 464 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 C15orf62A8K5M9 175 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 LEUTXA8MZ59 168 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 E7EUB6 86 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 FBXO24O75426 580 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 MED6O75586 246 aa3.33□□□□□ -1.88
MCF2-201ENST00000338585 KBTBD11O94819 623 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms