RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 TMEM50AO95807 157 aa12□□□□□ -0.49
CCDC88C-202ENST00000334448 CRYGBP07316 175 aa12□□□□□ -0.49
CCDC88C-202ENST00000334448 S100A11P31949 105 aa12□□□□□ -0.49
CCDC88C-202ENST00000334448 SAA4P35542 130 aa12□□□□□ -0.49
CCDC88C-202ENST00000334448 SPCS3P61009 180 aa12□□□□□ -0.49
CCDC88C-202ENST00000334448 MOB3BQ86TA1 216 aa12□□□□□ -0.49
CCDC88C-202ENST00000334448 VKORC1L1Q8N0U8 176 aa12□□□□□ -0.49
CCDC88C-202ENST00000334448 TEX45Q8NA69 505 aa12□□□□□ -0.49
CCDC88C-202ENST00000334448 SMIM8Q96KF7 97 aa12□□□□□ -0.49
CCDC88C-202ENST00000334448 TSNAXQ99598 290 aaKnown RBP12□□□□□ -0.49
CCDC88C-202ENST00000334448 GON7Q9BXV9 100 aa12□□□□□ -0.49
CCDC88C-202ENST00000334448 PLSCR3Q9NRY6 295 aa12□□□□□ -0.49
CCDC88C-202ENST00000334448 LYRM2Q9NU23 88 aaPredicted RBP12□□□□□ -0.49
CCDC88C-202ENST00000334448 BOLA1Q9Y3E2 137 aa12□□□□□ -0.49
CCDC88C-202ENST00000334448 PRRC2AP48634 2157 aaKnown RBP11.99□□□□□ -0.49
CCDC88C-202ENST00000334448 MSGN1A6NI15 193 aa11.99□□□□□ -0.49
CCDC88C-202ENST00000334448 WRBO00258 174 aa11.99□□□□□ -0.49
CCDC88C-202ENST00000334448 CHST1O43916 411 aa11.99□□□□□ -0.49
CCDC88C-202ENST00000334448 SSSCA1O60232 199 aa11.99□□□□□ -0.49
CCDC88C-202ENST00000334448 GPR137BO60478 399 aa11.99□□□□□ -0.49
CCDC88C-202ENST00000334448 TSC22D2O75157 780 aa11.99□□□□□ -0.49
CCDC88C-202ENST00000334448 HKR1P10072 659 aa11.99□□□□□ -0.49
CCDC88C-202ENST00000334448 NUP62P37198 522 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-202ENST00000334448 DYNLT3P51808 116 aa11.99□□□□□ -0.49
CCDC88C-202ENST00000334448 PAX9P55771 341 aa11.99□□□□□ -0.49
CCDC88C-202ENST00000334448 BPIFB3P59826 476 aa11.99□□□□□ -0.49
CCDC88C-202ENST00000334448 VMA21Q3ZAQ7 101 aa11.99□□□□□ -0.49
CCDC88C-202ENST00000334448 TMUB2Q71RG4 321 aa11.99□□□□□ -0.49
CCDC88C-202ENST00000334448 SSX9Q7RTT3 188 aa11.99□□□□□ -0.49
CCDC88C-202ENST00000334448 THNSL2Q86YJ6 484 aa11.99□□□□□ -0.49
CCDC88C-202ENST00000334448 PIP4P2Q8N4L2 257 aa11.99□□□□□ -0.49
CCDC88C-202ENST00000334448 Q8N6K4 173 aa11.99□□□□□ -0.49
CCDC88C-202ENST00000334448 OR5B3Q8NH48 314 aa11.99□□□□□ -0.49
CCDC88C-202ENST00000334448 OR4A16Q8NH70 328 aa11.99□□□□□ -0.49
CCDC88C-202ENST00000334448 CIB3Q96Q77 187 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-202ENST00000334448 C7orf69Q9H7B7 122 aa11.99□□□□□ -0.49
CCDC88C-202ENST00000334448 FKBP11Q9NYL4 201 aa11.99□□□□□ -0.49
CCDC88C-202ENST00000334448 TRAV3A0A0B4J244 114 aa11.98□□□□□ -0.49
CCDC88C-202ENST00000334448 INS-IGF2F8WCM5 200 aa11.98□□□□□ -0.49
CCDC88C-202ENST00000334448 FSHBP01225 129 aa11.98□□□□□ -0.49
CCDC88C-202ENST00000334448 RPL12P30050 165 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-202ENST00000334448 HSPE1P61604 102 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-202ENST00000334448 RPS16P62249 146 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-202ENST00000334448 BAXQ07812 192 aa11.98□□□□□ -0.49
CCDC88C-202ENST00000334448 DYNAPQ8N1N2 210 aa11.98□□□□□ -0.49
CCDC88C-202ENST00000334448 OR2C3Q8N628 320 aa11.98□□□□□ -0.49
CCDC88C-202ENST00000334448 NPBQ8NG41 125 aa11.98□□□□□ -0.49
CCDC88C-202ENST00000334448 QTRT1Q9BXR0 403 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-202ENST00000334448 MAGT1Q9H0U3 335 aa11.98□□□□□ -0.49
CCDC88C-202ENST00000334448 RBKSQ9H477 322 aa11.98□□□□□ -0.49
CCDC88C-202ENST00000334448 HILPDAQ9Y5L2 63 aa11.98□□□□□ -0.49
CCDC88C-202ENST00000334448 WNK2Q9Y3S1 2297 aa11.97□□□□□ -0.49
CCDC88C-202ENST00000334448 IGHV3-72A0A0B4J1Y9 119 aa11.97□□□□□ -0.49
CCDC88C-202ENST00000334448 TRAV40A0A0B4J280 105 aa11.97□□□□□ -0.49
CCDC88C-202ENST00000334448 BCL2L11O43521 198 aa11.97□□□□□ -0.49
CCDC88C-202ENST00000334448 NDUFA3O95167 84 aa11.97□□□□□ -0.49
CCDC88C-202ENST00000334448 MOSP00540 346 aa11.97□□□□□ -0.49
CCDC88C-202ENST00000334448 OR2B8PP59922 312 aa11.97□□□□□ -0.49
CCDC88C-202ENST00000334448 VAMP2P63027 116 aa11.97□□□□□ -0.49
CCDC88C-202ENST00000334448 OPCMLQ14982 345 aa11.97□□□□□ -0.49
CCDC88C-202ENST00000334448 PSG5Q15238 335 aa11.97□□□□□ -0.49
CCDC88C-202ENST00000334448 SSX2Q16385 188 aa11.97□□□□□ -0.49
CCDC88C-202ENST00000334448 PDZD9Q8IXQ8 264 aa11.97□□□□□ -0.49
CCDC88C-202ENST00000334448 STPG2Q8N412 459 aa11.97□□□□□ -0.49
CCDC88C-202ENST00000334448 WFDC11Q8NEX6 87 aa11.97□□□□□ -0.49
CCDC88C-202ENST00000334448 OR2T10Q8NGZ9 312 aa11.97□□□□□ -0.49
CCDC88C-202ENST00000334448 SLC25A31Q9H0C2 315 aa11.97□□□□□ -0.49
CCDC88C-202ENST00000334448 ARL6Q9H0F7 186 aa11.97□□□□□ -0.49
CCDC88C-202ENST00000334448 SLA2Q9H6Q3 261 aa11.97□□□□□ -0.49
CCDC88C-202ENST00000334448 TCF19Q9Y242 345 aa11.97□□□□□ -0.49
CCDC88C-202ENST00000334448 CCDC168Q8NDH2 2452 aa11.97□□□□□ -0.49
CCDC88C-202ENST00000334448 A0A1W2PRD5 423 aa11.96□□□□□ -0.49
CCDC88C-202ENST00000334448 A0A1W2PRF3 423 aa11.96□□□□□ -0.49
CCDC88C-202ENST00000334448 A0A1W2PRM7 423 aa11.96□□□□□ -0.49
CCDC88C-202ENST00000334448 TAAR5O14804 337 aa11.96□□□□□ -0.49
CCDC88C-202ENST00000334448 RGS13O14921 159 aa11.96□□□□□ -0.49
CCDC88C-202ENST00000334448 SCAF4O95104 1147 aaKnown RBP11.96□□□□□ -0.49
CCDC88C-202ENST00000334448 BRS3P32247 399 aa11.96□□□□□ -0.49
CCDC88C-202ENST00000334448 MAS1LP35410 378 aa11.96□□□□□ -0.49
CCDC88C-202ENST00000334448 VDAC2P45880 294 aaPredicted RBP11.96□□□□□ -0.49
CCDC88C-202ENST00000334448 RPL23AP62750 156 aaKnown RBP11.96□□□□□ -0.49
CCDC88C-202ENST00000334448 RPL8P62917 257 aaKnown RBP11.96□□□□□ -0.49
CCDC88C-202ENST00000334448 PRCDQ00LT1 54 aa11.96□□□□□ -0.49
CCDC88C-202ENST00000334448 AANATQ16613 207 aa11.96□□□□□ -0.49
CCDC88C-202ENST00000334448 MRGPRG-AS1Q2M3A8 158 aa11.96□□□□□ -0.49
CCDC88C-202ENST00000334448 KLF17Q5JT82 389 aaPredicted RBP11.96□□□□□ -0.49
CCDC88C-202ENST00000334448 TMEM252Q8N6L7 170 aa11.96□□□□□ -0.49
CCDC88C-202ENST00000334448 OR8H1Q8NGG4 311 aa11.96□□□□□ -0.49
CCDC88C-202ENST00000334448 DTD1Q8TEA8 209 aa11.96□□□□□ -0.49
CCDC88C-202ENST00000334448 C17orf50Q8WW18 174 aa11.96□□□□□ -0.49
CCDC88C-202ENST00000334448 EAF1Q96JC9 268 aaPredicted RBP11.96□□□□□ -0.49
CCDC88C-202ENST00000334448 RITA1Q96K30 269 aa11.96□□□□□ -0.49
CCDC88C-202ENST00000334448 MEGF9Q9H1U4 602 aa11.96□□□□□ -0.49
CCDC88C-202ENST00000334448 MAP1AP78559 2803 aaPredicted RBP11.96□□□□□ -0.5
CCDC88C-202ENST00000334448 RBMXL2O75526 392 aaKnown RBP11.95□□□□□ -0.5
CCDC88C-202ENST00000334448 TGFAP01135 160 aa11.95□□□□□ -0.5
CCDC88C-202ENST00000334448 IGKV1D-33P01593 117 aa11.95□□□□□ -0.5
CCDC88C-202ENST00000334448 IGKV1-33P01594 117 aa11.95□□□□□ -0.5
CCDC88C-202ENST00000334448 IGHV4-38-2P0DP08 117 aa11.95□□□□□ -0.5
CCDC88C-202ENST00000334448 ATP5IP56385 69 aaPredicted RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 114.4 ms